pycom16g02080

MLP-like protein 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000362
Physical Location & Seq
Reverse (-)
1313592 .. 1314215
624 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02080.1

Sequence Viewer

Length: 483 bp
ATGGCTCAAATAGCAAAGATGGAGGTCCAGGCTGAGATTAAAGCCAGTGCCGACAAGTTCTACGAAATCTTTCTTAGCAAAGGGTACCTGTTGCCCAAGATGTGCCCTAATGTCATAAAGGACCTTCAGGTCATCCAAGGTGACTGGGGCTCTGTGGGCTCAGTCAAGCAATGGACTTACTTTGCTGCAGGCAATGTTTCTGAGGTTTCTAGAGAGACAATTGAAGCCATAGATGAGAAAAACAAATCAGTGACTTTCCGAACAGTAGGAGGACAGTTGACGAAATACTACAAGAGTTTCAAGGCTACGGTTCAAGTCACACCAAAGGTTAGTGGGGGATGCAGCAGCTCATCAGTGAAATGGACCGTCGAGTATGAGAAGTTGACGGAGGGTGTTCCGGTTCCTCAGAAGTACATGGACTTTTTGGTCCTTCTGACTAACAGTATTGATGCCCACCTTCTCAATAATAAATTAATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

161

Amino Acids

17.83

Weight (kDa)

8.76

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 156 7e-45 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 5 - 130 3e-07 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 425
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 2 cut(s) 86, 413
AgsI TTSAA 3 cut(s) 224, 301, 314
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 348
AluI AGCT 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 209
ApeKI GCWGC 3 cut(s) 185, 342, 345
AseI ATTAAT 2 cut(s) 473, 477
Asp700I GAANNNNTTC 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 84
AspS9I GGNCC 4 cut(s) 25, 121, 363, 427
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 4 cut(s) 25, 121, 363, 427
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 2 cut(s) 152, 161
BbvI GCAGC 3 cut(s) 172, 354, 357
BccI CCATC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 3 cut(s) 186, 343, 346
BlsI GCNGC 3 cut(s) 187, 344, 347
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 4 cut(s) 25, 121, 363, 427
BmgT120I GGNCC 4 cut(s) 25, 121, 363, 427
BmiI GGNNCC 2 cut(s) 86, 402
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 329, 439
BmuI ACTGGG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 397
Bse1I ACTGG 2 cut(s) 45, 149
Bse3DI GCAATG 2 cut(s) 176, 199
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 132, 344
BseMI GCAATG 2 cut(s) 176, 199
BseMII CTCAG 4 cut(s) 24, 174, 192, 419
BseNI ACTGG 2 cut(s) 45, 149
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 3 cut(s) 172, 354, 357
BshNI GGYRCC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 107, 152, 161
BspCNI CTCAG 4 cut(s) 25, 173, 193, 418
BspLI GGNNCC 2 cut(s) 86, 402
BspMAI CTGCAG 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 84
BsrDI GCAATG 2 cut(s) 176, 199
BsrI ACTGG 2 cut(s) 45, 149
BssECI CCNNGG 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 5 cut(s) 265, 276, 310, 367, 443
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 5 cut(s) 33, 74, 160, 201, 405
BstF5I GGATG 2 cut(s) 132, 344
BstMAI GTCTC 1 cut(s) 209
BstMWI GCNNNNNNNGC 2 cut(s) 11, 156
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 172, 354, 357
BtsCI GGATG 2 cut(s) 132, 344
BtsIMutI CAGTG 3 cut(s) 52, 255, 360
Cac8I GCNNGC 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 25, 121, 363, 427
Csp6I GTAC 2 cut(s) 85, 412
CviAII CATG 1 cut(s) 415
CviJI RGCY 8 cut(s) 5, 32, 44, 150, 159, 227, 305, 348
CviKI_1 RGCY 8 cut(s) 5, 32, 44, 150, 159, 227, 305, 348
CviQI GTAC 2 cut(s) 85, 412
DdeI CTNAG 5 cut(s) 33, 74, 160, 201, 405
DrdI GACNNNNNNGTC 2 cut(s) 128, 425
DseDI GACNNNNNNGTC 2 cut(s) 128, 425
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 2 cut(s) 152, 161
Eco47I GGWCC 4 cut(s) 25, 121, 363, 427
Eco57I CTGAAG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 2 cut(s) 152, 161
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 418
FaiI YATR 4 cut(s) 116, 230, 375, 416
FatI CATG 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 186, 343, 346
FokI GGATG 2 cut(s) 119, 351
FriOI GRGCYC 2 cut(s) 152, 161
Fsp4HI GCNGC 3 cut(s) 186, 343, 346
FspBI CTAG 1 cut(s) 210
GluI GCNGC 3 cut(s) 186, 343, 346
HapII CCGG 1 cut(s) 398
Hin1II CATG 1 cut(s) 418
HincII GTYRAC 2 cut(s) 279, 384
HindII GTYRAC 2 cut(s) 279, 384
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 279, 384
Hpy188I TCNGA 4 cut(s) 202, 260, 408, 435
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 2 cut(s) 279, 384
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 134, 440, 467
HpyCH4III ACNGT 5 cut(s) 265, 276, 310, 367, 443
HpyCH4V TGCA 2 cut(s) 188, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 156
HpyF3I CTNAG 5 cut(s) 33, 74, 160, 201, 405
Hsp92II CATG 1 cut(s) 418
KpnI GGTACC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 14, 41, 58, 101, 113, 130, 174, 411
Lsp1109I GCAGC 3 cut(s) 172, 354, 357
LweI GCATC 2 cut(s) 329, 439
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 140, 250, 316
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 3 cut(s) 107, 152, 161
MluCI AATT 4 cut(s) 219, 470, 474, 478
MnlI CCTC 5 cut(s) 16, 196, 263, 382, 414
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 3 cut(s) 39, 473, 477
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 11, 156
NlaIII CATG 1 cut(s) 418
NlaIV GGNNCC 2 cut(s) 86, 402
NmuCI GTSAC 3 cut(s) 140, 250, 316
PacI TTAATTAA 1 cut(s) 477
PdmI GAANNNNTTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 187, 344, 347
PpuMI RGGWCCY 1 cut(s) 121
PshBI ATTAAT 2 cut(s) 473, 477
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 86, 402
PspPI GGNCC 4 cut(s) 25, 121, 363, 427
PspPPI RGGWCCY 1 cut(s) 121
PstI CTGCAG 1 cut(s) 190
RsaI GTAC 2 cut(s) 86, 413
RsaNI GTAC 2 cut(s) 85, 412
SaqAI TTAA 3 cut(s) 39, 473, 477
SatI GCNGC 3 cut(s) 186, 343, 346
Sau96I GGNCC 4 cut(s) 25, 121, 363, 427
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 3 cut(s) 107, 152, 161
SetI ASST 9 cut(s) 27, 90, 126, 132, 142, 207, 330, 350, 459
SfaNI GCATC 2 cut(s) 329, 439
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 4 cut(s) 25, 121, 363, 427
Sse9I AATT 4 cut(s) 219, 470, 474, 478
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 5 cut(s) 265, 276, 310, 367, 443
TaqI TCGA 1 cut(s) 369
TasI AATT 4 cut(s) 219, 470, 474, 478
TatI WGTACW 1 cut(s) 411
Tru1I TTAA 3 cut(s) 39, 473, 477
Tru9I TTAA 3 cut(s) 39, 473, 477
TscAI CASTG 3 cut(s) 52, 255, 360
TseFI GTSAC 3 cut(s) 140, 250, 316
TseI GCWGC 3 cut(s) 185, 342, 345
Tsp45I GTSAC 3 cut(s) 140, 250, 316
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 3 cut(s) 52, 255, 360
VpaK11BI GGWCC 4 cut(s) 25, 121, 363, 427
VspI ATTAAT 2 cut(s) 473, 477
XbaI TCTAGA 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.