Rroxscaffold_159G00432880

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000362
Physical Location & Seq
Reverse (-)
557208 .. 561770
4563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432880.1

Sequence Viewer

Length: 540 bp
ATGGTTCGTTTGAGGTTGTTCGGAGAAAGGAAAGATTATGATTGTGTGTTGTGTTTTTTCCAAAGCGGGTTTTTAGTGAAAATGGCTTTGACTGGTAAGATAGAGACGGATGTAGAAATCAAGGCTTCTGCTGCACAGTTCCACGAAATGTTCACCCACAAACCACACCACATTTCCAATATCAGCTCCAACCACATTCAAGGCGTTGACTTACATGAAGGTGACTGGGGAACAGTCGGTGCTATCGTCTACTGGAATTACTTCCATGATGGGAAAGCTAGAGTTGCCAAGGAAAGAATTGAGGCCATAGACGCGGAAAAAAACTTGGTGACTTTCAAAGTAATTGAGGGAGACCTTATGGAGCATTACAAGAGCTTCTTGTTCACCGTTCAAGCCACTCCGAAAGGCGAGGGCTGCTCCGTGCACTGGACTCTGGAATATGAGAAGCATCACGGTGATATTACCGACCCGCATACGCTGCTCCAGATTGCAGTCGAGGTTTCCAACGACATCGATGCTCACCTTACTGCCCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

179

Amino Acids

20.32

Weight (kDa)

5.75

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 29 - 177 6.3e-55 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 33 - 152 2.7e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 314
AciI CCGC 3 cut(s) 66, 314, 470
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 3 cut(s) 200, 337, 392
AluBI AGCT 3 cut(s) 186, 278, 375
AluI AGCT 3 cut(s) 186, 278, 375
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 2 cut(s) 98, 345
Alw44I GTGCAC 1 cut(s) 422
AoxI GGCC 1 cut(s) 303
ApaLI GTGCAC 1 cut(s) 422
ApeKI GCWGC 3 cut(s) 131, 414, 478
Asp700I GAANNNNTTC 1 cut(s) 260
AsuHPI GGTGA 6 cut(s) 145, 233, 340, 376, 467, 512
BaeGI GKGCMC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 118, 401, 465
BccI CCATC 1 cut(s) 263
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BcoDI GTCTC 2 cut(s) 98, 345
BfaI CTAG 1 cut(s) 279
BisI GCNGC 3 cut(s) 132, 415, 479
BlsI GCNGC 3 cut(s) 133, 416, 480
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 2 cut(s) 457, 505
BmuI ACTGGG 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 1 cut(s) 467
Bsa29I ATCGAT 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 4 cut(s) 97, 230, 257, 431
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 426
BseNI ACTGG 4 cut(s) 97, 230, 257, 431
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 3 cut(s) 118, 401, 465
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 2 cut(s) 98, 345
BsmBI CGTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 426
BspACI CCGC 3 cut(s) 66, 314, 470
BspANI GGCC 1 cut(s) 305
BspDI ATCGAT 1 cut(s) 513
BspFNI CGCG 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 345
BsrI ACTGG 4 cut(s) 97, 230, 257, 431
BssECI CCNNGG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 4 cut(s) 138, 235, 388, 455
BstAPI GCANNNNNTGC 1 cut(s) 478
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 1 cut(s) 314
BstMAI GTCTC 2 cut(s) 98, 345
BstMWI GCNNNNNNNGC 5 cut(s) 131, 284, 311, 414, 478
BstSLI GKGCMC 1 cut(s) 426
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 118, 401, 465
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 1 cut(s) 305
BsuTUI ATCGAT 1 cut(s) 513
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 424
ClaI ATCGAT 1 cut(s) 513
CseI GACGC 1 cut(s) 320
CviAII CATG 2 cut(s) 215, 266
CviJI RGCY 8 cut(s) 86, 125, 186, 278, 305, 375, 395, 414
CviKI_1 RGCY 8 cut(s) 86, 125, 186, 278, 305, 375, 395, 414
Eco130I CCWWGG 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 2 cut(s) 218, 269
FaiI YATR 8 cut(s) 39, 216, 267, 308, 359, 441, 474, 538
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FatI CATG 2 cut(s) 214, 265
FauI CCCGC 2 cut(s) 59, 477
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 132, 415, 479
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 3 cut(s) 132, 415, 479
FspBI CTAG 1 cut(s) 279
GluI GCNGC 3 cut(s) 132, 415, 479
GsuI CTGGAG 1 cut(s) 467
HaeIII GGCC 1 cut(s) 305
HgaI GACGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 218, 269
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 1 cut(s) 430
HphI GGTGA 6 cut(s) 145, 233, 340, 376, 467, 512
Hpy166II GTNNAC 5 cut(s) 153, 208, 250, 384, 424
Hpy188I TCNGA 2 cut(s) 23, 402
Hpy188III TCNNGA 2 cut(s) 434, 484
Hpy8I GTNNAC 5 cut(s) 153, 208, 250, 384, 424
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 4 cut(s) 138, 235, 388, 455
HpyCH4V TGCA 3 cut(s) 134, 424, 491
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 284, 311, 414, 478
Hsp92II CATG 2 cut(s) 218, 269
LmnI GCTCC 4 cut(s) 191, 361, 422, 486
LpnPI CCDG 6 cut(s) 78, 211, 238, 412, 419, 497
Lsp1109I GCAGC 3 cut(s) 118, 401, 465
LweI GCATC 2 cut(s) 457, 505
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 221, 328
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 3 cut(s) 256, 297, 342
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 2 cut(s) 213, 528
MnlI CCTC 5 cut(s) 6, 295, 340, 403, 490
MroXI GAANNNNTTC 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 219, 453
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 5 cut(s) 131, 284, 311, 414, 478
NlaIII CATG 2 cut(s) 218, 269
NmuCI GTSAC 2 cut(s) 221, 328
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 260
PkrI GCNGC 3 cut(s) 133, 416, 480
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
RseI CAYNNNNRTG 2 cut(s) 219, 453
SatI GCNGC 3 cut(s) 132, 415, 479
SchI GAGTC 1 cut(s) 424
SduI GDGCHC 1 cut(s) 426
SetI ASST 8 cut(s) 17, 188, 223, 280, 357, 377, 501, 525
SfaNI GCATC 2 cut(s) 457, 505
SmiMI CAYNNNNRTG 2 cut(s) 219, 453
Sse9I AATT 3 cut(s) 256, 297, 342
SsiI CCGC 3 cut(s) 66, 314, 470
SspMI CTAG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 4 cut(s) 138, 235, 388, 455
TaqI TCGA 2 cut(s) 495, 513
TasI AATT 3 cut(s) 256, 297, 342
TscAI CASTG 1 cut(s) 431
TseFI GTSAC 2 cut(s) 221, 328
TseI GCWGC 3 cut(s) 131, 414, 478
Tsp45I GTSAC 2 cut(s) 221, 328
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 2 cut(s) 122, 409
TspRI CASTG 1 cut(s) 431
VneI GTGCAC 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.