AT1G70840

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000362
Physical Location & Seq
Reverse (-)
26712982 .. 26714069
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70840.1

Sequence Viewer

Length: 516 bp
ATGGCGACTAAAATGGCCGGGGCAGCAATGAATTTAGCAAAGAGAGAGTCGTCAAGTTTGTGTGGGAAGCTAGAGACAGATATTGAAATCAAAGCTTCAGCTGGGAAGTTCCATCACATGTTTGCTGGGAGACCACACCATGTCTCCAAAGCAACTCCAGGGAAAATTCAGGGTTGTGAGCTGCATGAAGGTGACTGGGGCAAAGTCGGCTCTATCGTCTTCTGGAATTATGTTCATGATGGAGAGGCAAAGGTGGCAAAAGAAAGGATCGAGGCAGTGGAGCCGGAGAAAAACCTGATCACTTTTAGGGTGATAGAGGGAGACTTATTAAAAGAGTATAAAAGCTTTGTGATCACAATCCAAGTGACCCCTAAGAGAGGAGGACCTGGGAGTGTGGTGCACTGGCACGTCGAGTATGAGAAAATTGACGACAAAGTGGCCCACCCTGAGACCTTTCTTGATTTCTGTGTGGAAGTCTCCAAAGAGATCGATGAACATCTCCTGAACGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

5.93

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 20 - 170 2e-63 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 23 - 141 2e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 2 cut(s) 31, 165
AcuI CTGAAG 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 377, 508
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 1 cut(s) 86
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 2 cut(s) 157, 385
AluBI AGCT 5 cut(s) 70, 95, 101, 181, 345
AluI AGCT 5 cut(s) 70, 95, 101, 181, 345
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 6 cut(s) 68, 124, 148, 315, 443, 481
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 1 cut(s) 275
AoxI GGCC 2 cut(s) 15, 438
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 23, 181
ApoI RAATTY 2 cut(s) 31, 165
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspS9I GGNCC 2 cut(s) 383, 439
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 203, 322
AvaII GGWCC 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 35, 168
BccI CCATC 2 cut(s) 120, 233
BciT130I CCWGG 2 cut(s) 159, 387
BclI TGATCA 2 cut(s) 297, 351
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 6 cut(s) 68, 124, 148, 315, 443, 481
BfaI CTAG 1 cut(s) 71
BisI GCNGC 2 cut(s) 24, 182
BlsI GCNGC 2 cut(s) 25, 183
Bme1390I CCNGG 3 cut(s) 19, 159, 387
Bme18I GGWCC 1 cut(s) 383
BmgBI CACGTC 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 383, 439
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 3 cut(s) 19, 159, 387
BmrI ACTGGG 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 489
BsaBI GATNNNNATC 2 cut(s) 356, 495
BsaI GGTCTC 2 cut(s) 124, 443
BsaJI CCNNGG 3 cut(s) 18, 158, 386
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 508
Bse1I ACTGG 2 cut(s) 200, 407
Bse3DI GCAATG 1 cut(s) 33
Bse8I GATNNNNATC 2 cut(s) 356, 495
BseBI CCWGG 2 cut(s) 159, 387
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 18, 158, 386
BseJI GATNNNNATC 2 cut(s) 356, 495
BseLI CCNNNNNNNGG 2 cut(s) 377, 508
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 200, 407
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 35, 168
BseYI CCCAGC 2 cut(s) 101, 125
BshFI GGCC 2 cut(s) 17, 440
BshVI ATCGAT 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 18, 284
BslI CCNNNNNNNGG 2 cut(s) 377, 508
BsmAI GTCTC 6 cut(s) 68, 124, 148, 315, 443, 481
BsnI GGCC 2 cut(s) 17, 440
Bso31I GGTCTC 2 cut(s) 124, 443
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 4 cut(s) 267, 297, 351, 486
BspANI GGCC 2 cut(s) 17, 440
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 489
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 1 cut(s) 275
BspTNI GGTCTC 2 cut(s) 124, 443
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 2 cut(s) 200, 407
BssECI CCNNGG 3 cut(s) 18, 158, 386
BssMI GATC 4 cut(s) 267, 297, 351, 486
Bst2UI CCWGG 2 cut(s) 159, 387
BstDEI CTNAG 2 cut(s) 372, 447
BstENI CCTNNNNNAGG 2 cut(s) 375, 506
BstKTI GATC 4 cut(s) 270, 300, 354, 489
BstMAI GTCTC 6 cut(s) 68, 124, 148, 315, 443, 481
BstMBI GATC 4 cut(s) 267, 297, 351, 486
BstMWI GCNNNNNNNGC 3 cut(s) 23, 207, 254
BstNI CCWGG 2 cut(s) 159, 387
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 3 cut(s) 17, 157, 385
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 35, 168
BstV2I GAAGAC 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 2 cut(s) 17, 440
BsuTUI ATCGAT 1 cut(s) 489
BtrI CACGTC 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 282, 400
CciI TCATGA 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 383, 439
ClaI ATCGAT 1 cut(s) 489
CviAII CATG 4 cut(s) 118, 140, 185, 236
CviJI RGCY 9 cut(s) 17, 70, 95, 101, 181, 210, 283, 345, 440
CviKI_1 RGCY 9 cut(s) 17, 70, 95, 101, 181, 210, 283, 345, 440
DdeI CTNAG 2 cut(s) 372, 447
DpnI GATC 4 cut(s) 269, 299, 353, 488
DpnII GATC 4 cut(s) 267, 297, 351, 486
EaeI YGGCCR 1 cut(s) 15
Eco31I GGTCTC 2 cut(s) 124, 443
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 81
EcoNI CCTNNNNNAGG 2 cut(s) 375, 506
EcoO109I RGGNCCY 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 157, 385
FaeI CATG 4 cut(s) 121, 143, 188, 239
FaiI YATR 7 cut(s) 119, 141, 186, 231, 237, 339, 417
FatI CATG 4 cut(s) 117, 139, 184, 235
FbaI TGATCA 2 cut(s) 297, 351
Fnu4HI GCNGC 2 cut(s) 24, 182
Fsp4HI GCNGC 2 cut(s) 24, 182
FspBI CTAG 1 cut(s) 71
GluI GCNGC 2 cut(s) 24, 182
GsaI CCCAGC 2 cut(s) 105, 129
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 2 cut(s) 17, 440
HapII CCGG 2 cut(s) 18, 284
Hin1II CATG 4 cut(s) 121, 143, 188, 239
HindIII AAGCTT 2 cut(s) 93, 343
HinfI GANTC 1 cut(s) 47
HpaII CCGG 2 cut(s) 18, 284
HphI GGTGA 2 cut(s) 203, 322
Hpy166II GTNNAC 1 cut(s) 400
Hpy188III TCNNGA 4 cut(s) 223, 236, 458, 502
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 2 cut(s) 184, 400
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 207, 254
HpyF3I CTNAG 2 cut(s) 372, 447
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 121, 143, 188, 239
Ksp22I TGATCA 2 cut(s) 297, 351
Kzo9I GATC 4 cut(s) 267, 297, 351, 486
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 2 cut(s) 35, 168
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 2 cut(s) 191, 364
MalI GATC 4 cut(s) 269, 299, 353, 488
MboI GATC 4 cut(s) 267, 297, 351, 486
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 4 cut(s) 31, 165, 226, 423
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 6 cut(s) 238, 265, 310, 371, 374, 502
MseI TTAA 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 18, 284
MspR9I CCNGG 3 cut(s) 19, 159, 387
MvaI CCWGG 2 cut(s) 159, 387
MwoI GCNNNNNNNGC 3 cut(s) 23, 207, 254
NciI CCSGG 1 cut(s) 19
NdeII GATC 4 cut(s) 267, 297, 351, 486
NlaIII CATG 4 cut(s) 121, 143, 188, 239
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 191, 364
NspI RCATGY 1 cut(s) 121
PagI TCATGA 1 cut(s) 235
PciI ACATGT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PkrI GCNGC 2 cut(s) 25, 183
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 383
PscI ACATGT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 2 cut(s) 157, 385
PspFI CCCAGC 2 cut(s) 101, 125
PspGI CCWGG 2 cut(s) 157, 385
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 2 cut(s) 383, 439
PspPPI RGGWCCY 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 2 cut(s) 24, 182
Sau3AI GATC 4 cut(s) 267, 297, 351, 486
Sau96I GGNCC 2 cut(s) 383, 439
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 3 cut(s) 19, 159, 387
SduI GDGCHC 1 cut(s) 402
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 4 cut(s) 31, 165, 226, 423
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 17, 157, 385
TaiI ACGT 1 cut(s) 411
TaqI TCGA 3 cut(s) 270, 411, 489
TasI AATT 4 cut(s) 31, 165, 226, 423
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 2 cut(s) 282, 407
TseFI GTSAC 2 cut(s) 191, 364
TseI GCWGC 2 cut(s) 23, 181
Tsp45I GTSAC 2 cut(s) 191, 364
TspDTI ATGAA 4 cut(s) 44, 201, 224, 507
TspRI CASTG 2 cut(s) 282, 407
VneI GTGCAC 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 383
XagI CCTNNNNNAGG 2 cut(s) 375, 506
XapI RAATTY 2 cut(s) 31, 165
XceI RCATGY 1 cut(s) 121
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.