RchiOBHm_Chr4g0441771

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000362
Physical Location & Seq
Forward (+)
63588624 .. 63589172
549 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40956

Sequence Viewer

Length: 375 bp
ATGGCTTTGACTGGTAAGATAGAAACGGATGTAGAAATCAAGGCTTCTGCTGCAAAGTTTCACGAAATGTTCACCCACAAACCACACCACATTTCCAATGTCAGCTCCAACAACATTCAAGGCTGTGACTTACATGAAGGTGACTGGGGAACAGTCGGTACTATCATCTACTGGAATTACTTCCATGATCTTATGGAGCATTACAAGAGCTTCTTGATCACCATTCAAGCCACTCCGAAAGGTGAGGGCTGCTCCGTGCACTGGACTATGGAGTATGAGAAGCATCATGGCGATATTACCGACCCGCATACGCTGCTCCAGTTTGCAGTCGAGGTTTCCAACGATATCGATGTTCACCTTACTGCCCAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

124

Amino Acids

14.12

Weight (kDa)

5.4

Isoelectric Point (pI)

23.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 63 1.2e-20 Pathogenesis-related protein Bet v 1 family
Bet_v_1 PF00407 63 - 122 2.8e-14 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 2 cut(s) 119, 227
AluBI AGCT 2 cut(s) 105, 210
AluI AGCT 2 cut(s) 105, 210
Alw21I GWGCWC 1 cut(s) 261
Alw44I GTGCAC 1 cut(s) 257
ApaLI GTGCAC 1 cut(s) 257
ApeKI GCWGC 3 cut(s) 50, 249, 313
Asp700I GAANNNNTTC 1 cut(s) 179
AsuHPI GGTGA 5 cut(s) 64, 152, 211, 254, 347
BaeGI GKGCMC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 3 cut(s) 37, 236, 300
BclI TGATCA 1 cut(s) 216
BisI GCNGC 3 cut(s) 51, 250, 314
BlsI GCNGC 3 cut(s) 52, 251, 315
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 5 cut(s) 16, 149, 176, 266, 319
BseCI ATCGAT 1 cut(s) 348
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 261
BseNI ACTGG 5 cut(s) 16, 149, 176, 266, 319
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 3 cut(s) 37, 236, 300
BshVI ATCGAT 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 187, 216
BspACI CCGC 1 cut(s) 305
BspDI ATCGAT 1 cut(s) 348
BsrI ACTGG 5 cut(s) 16, 149, 176, 266, 319
BssMI GATC 2 cut(s) 187, 216
Bst4CI ACNGT 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 313
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 2 cut(s) 190, 219
BstMBI GATC 2 cut(s) 187, 216
BstMWI GCNNNNNNNGC 2 cut(s) 50, 313
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 37, 236, 300
Bsu15I ATCGAT 1 cut(s) 348
BsuTUI ATCGAT 1 cut(s) 348
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 348
Csp6I GTAC 1 cut(s) 159
CviAII CATG 3 cut(s) 134, 185, 287
CviJI RGCY 7 cut(s) 5, 44, 105, 123, 210, 230, 249
CviKI_1 RGCY 7 cut(s) 5, 44, 105, 123, 210, 230, 249
CviQI GTAC 1 cut(s) 159
DpnI GATC 2 cut(s) 189, 218
DpnII GATC 2 cut(s) 187, 216
Eco32I GATATC 1 cut(s) 346
EcoRV GATATC 1 cut(s) 346
FaeI CATG 3 cut(s) 137, 188, 290
FaiI YATR 7 cut(s) 135, 186, 194, 269, 276, 288, 309
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FatI CATG 3 cut(s) 133, 184, 286
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 51, 250, 314
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 51, 250, 314
GluI GCNGC 3 cut(s) 51, 250, 314
GsuI CTGGAG 1 cut(s) 302
Hin1II CATG 3 cut(s) 137, 188, 290
HphI GGTGA 5 cut(s) 64, 152, 211, 254, 347
Hpy166II GTNNAC 3 cut(s) 72, 259, 355
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 62, 214
Hpy8I GTNNAC 3 cut(s) 72, 259, 355
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 53, 259, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 313
Hsp92II CATG 3 cut(s) 137, 188, 290
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 2 cut(s) 187, 216
LmnI GCTCC 4 cut(s) 110, 196, 257, 321
LpnPI CCDG 4 cut(s) 130, 157, 247, 332
Lsp1109I GCAGC 3 cut(s) 37, 236, 300
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 125, 140
MalI GATC 2 cut(s) 189, 218
MboI GATC 2 cut(s) 187, 216
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 1 cut(s) 175
MmeI TCCRAC 2 cut(s) 132, 363
MnlI CCTC 2 cut(s) 238, 325
MroXI GAANNNNTTC 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 50, 313
NdeII GATC 2 cut(s) 187, 216
NlaIII CATG 3 cut(s) 137, 188, 290
NmuCI GTSAC 2 cut(s) 125, 140
PdmI GAANNNNTTC 1 cut(s) 179
PkrI GCNGC 3 cut(s) 52, 251, 315
PsrI GAACNNNNNNTAC 2 cut(s) 142, 174
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 3 cut(s) 51, 250, 314
Sau3AI GATC 2 cut(s) 187, 216
SduI GDGCHC 1 cut(s) 261
SetI ASST 6 cut(s) 107, 142, 212, 244, 336, 360
SfaNI GCATC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 175
SsiI CCGC 1 cut(s) 305
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 330, 348
TasI AATT 1 cut(s) 175
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 2 cut(s) 125, 140
TseI GCWGC 3 cut(s) 50, 249, 313
Tsp45I GTSAC 2 cut(s) 125, 140
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 2 cut(s) 41, 244
TspRI CASTG 1 cut(s) 266
VneI GTGCAC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.