AT1G35310

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000362
Physical Location & Seq
Reverse (-)
12956119 .. 12957090
972 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35310.1

Sequence Viewer

Length: 456 bp
ATGGTAGAGGCAGAGGTTGAAGTAGATGTGGAAATCAAATCTACGGCTGATAAGTTTTTCATGTTCTCTAGAAGATCACAACATGCCTCCAAAGCCACTCGCTATGTACAGGGATGTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGAAATTAACTGTTGATGGAGAGCCAAAAGTGTCAAAGGATATGATTGAGGCGATTGATATGAAGATGAATATGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGGAAGAGTACAATATTTTCTCGAAAACGATGAAAGTAAGCCCTAAGCAAGGAGGGTCTGGAAGTGTGGTGAAGTGGAACTTGAAGTATGAGAGAATTGATGAGAAGGTGGCTCACCTAGAGAGGCTCCTTCAGTTCTTCGTCGAATGTGTTAACGAGATTGACCAATACCTATTGTCTGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

151

Amino Acids

17.41

Weight (kDa)

5.07

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 150 2.6e-55 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 232
AcuI CTGAAG 2 cut(s) 287, 383
AfaI GTAC 2 cut(s) 108, 278
AfiI CCNNNNNNNGG 2 cut(s) 247, 317
AgsI TTSAA 2 cut(s) 20, 352
AlwI GGATC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 349, 374
AvaII GGWCC 1 cut(s) 260
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 60
BfaI CTAG 2 cut(s) 69, 386
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 261, 395
Bpu10I CCTNAGC 1 cut(s) 312
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 317
Bse1I ACTGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 247, 317
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 247, 317
BsmFI GGGAC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 3 cut(s) 74, 118, 237
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 261, 395
BspPI GGATC 1 cut(s) 232
BsrGI TGTACA 1 cut(s) 106
BsrI ACTGG 1 cut(s) 241
BssMI GATC 3 cut(s) 74, 118, 237
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 312, 447
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 3 cut(s) 77, 121, 240
BstMBI GATC 3 cut(s) 74, 118, 237
BstMWI GCNNNNNNNGC 2 cut(s) 92, 138
BstNSI RCATGY 1 cut(s) 86
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 107, 277
CviAII CATG 2 cut(s) 61, 83
CviJI RGCY 6 cut(s) 47, 95, 187, 309, 380, 394
CviKI_1 RGCY 6 cut(s) 47, 95, 187, 309, 380, 394
CviQI GTAC 2 cut(s) 107, 277
DdeI CTNAG 2 cut(s) 312, 447
DpnI GATC 3 cut(s) 76, 120, 239
DpnII GATC 3 cut(s) 74, 118, 237
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 2 cut(s) 287, 383
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 260
FaeI CATG 2 cut(s) 64, 86
FaiI YATR 8 cut(s) 62, 84, 105, 155, 206, 224, 236, 357
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 1 cut(s) 273
FatI CATG 2 cut(s) 60, 82
FokI GGATG 1 cut(s) 126
FspBI CTAG 2 cut(s) 69, 386
Hin1II CATG 2 cut(s) 64, 86
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HpaI GTTAAC 1 cut(s) 421
HphI GGTGA 2 cut(s) 349, 374
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 2 cut(s) 267, 448
Hpy188III TCNNGA 3 cut(s) 69, 289, 327
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 4 cut(s) 122, 262, 367, 407
HpyCH4III ACNGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 138
HpyF3I CTNAG 2 cut(s) 312, 447
Hsp92II CATG 2 cut(s) 64, 86
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 3 cut(s) 74, 118, 237
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 3 cut(s) 95, 254, 312
MaeI CTAG 2 cut(s) 69, 386
MalI GATC 3 cut(s) 76, 120, 239
MboI GATC 3 cut(s) 74, 118, 237
MboII GAAGA 4 cut(s) 84, 238, 284, 397
MluCI AATT 2 cut(s) 167, 363
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 9 cut(s) 7, 97, 205, 240, 250, 273, 314, 384, 442
MseI TTAA 2 cut(s) 170, 420
MwoI GCNNNNNNNGC 2 cut(s) 92, 138
NdeII GATC 3 cut(s) 74, 118, 237
NlaIII CATG 2 cut(s) 64, 86
NlaIV GGNNCC 2 cut(s) 261, 395
NspI RCATGY 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 261, 395
PspPI GGNCC 1 cut(s) 260
PspPPI RGGWCCY 1 cut(s) 260
RsaI GTAC 2 cut(s) 108, 278
RsaNI GTAC 2 cut(s) 107, 277
SaqAI TTAA 2 cut(s) 170, 420
Sau3AI GATC 3 cut(s) 74, 118, 237
Sau96I GGNCC 1 cut(s) 260
SetI ASST 5 cut(s) 18, 265, 378, 387, 441
SinI GGWCC 1 cut(s) 260
Sse9I AATT 2 cut(s) 167, 363
SspI AATATT 1 cut(s) 283
SspMI CTAG 2 cut(s) 69, 386
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 3 cut(s) 126, 290, 411
TasI AATT 2 cut(s) 167, 363
TatI WGTACW 2 cut(s) 106, 276
Tru1I TTAA 2 cut(s) 170, 420
Tru9I TTAA 2 cut(s) 170, 420
TscAI CASTG 1 cut(s) 248
TspDTI ATGAA 4 cut(s) 49, 239, 245, 314
TspRI CASTG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 315
XbaI TCTAGA 1 cut(s) 68
XceI RCATGY 1 cut(s) 86
XspI CTAG 2 cut(s) 69, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.