Rh4AG387200

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000362
Physical Location & Seq
Forward (+)
69426263 .. 69427858
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG387200.1

Sequence Viewer

Length: 651 bp
ATGCATTCCGAGACCACAATGACCATGACAGGACTTGGGTATTGGAATATTGTTTCTTTAGCGCGCAGAACCATTCGGCTTTCATTTTGGATCTCTATAAGTACTTATTTAGCTTGGTTTTCCTCAACACTCACACAAATTACAGAAGTAGCTACTAGTGGCTTGACACAACTCAGTCCAATCTCTAACGCCATGGCTCAAATAGCAAAAATGCAAGTTGAAGCTGAGATCAAAGCCAGTGCTGAAAAGTTCTACGAAATCTTTCGTAGCAAAGGGTACTTGTTGCCCAAGATCTGCCCTGACATGATAAAGGACCTGCGGGTACTCGAAGGGGATTGGGGAACTGTAGGCTCGGTCAAGCAGTGGACTTACGTTGCTGCAGGTAATTCTGAGATTGCAAAAGAGACGGTTGAAGCCATGGATGAAAAAGCCAAATCAATCACTTTCAAGACGGTGGATGGATCGCTCCTGAAAGTCTACAAGAATATGAAGGCTACGGTTCAGGTTACGGCAAAGGCTGGCGGATGCAGCTCGGTGAAATGGAGTATAGAATATGAGAAGCTGAACGAGGATTCTCCACCTCCCAATAAGTATCTGGACTTTGTTCTCATTCTCAATAAAAAGGTTGATGCCTACCTTCTCAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

216

Amino Acids

24.16

Weight (kDa)

9.03

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 69 - 215 2.1e-46 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 70 - 192 1.9e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 324, 371
AccI GTMKAC 1 cut(s) 477
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 319, 522
AclWI GGATC 2 cut(s) 98, 469
AfaI GTAC 3 cut(s) 103, 278, 324
AgsI TTSAA 3 cut(s) 221, 413, 448
AhlI ACTAGT 1 cut(s) 155
AluBI AGCT 5 cut(s) 113, 152, 224, 531, 562
AluI AGCT 5 cut(s) 113, 152, 224, 531, 562
Alw26I GTCTC 2 cut(s) 5, 398
AlwI GGATC 2 cut(s) 98, 469
ApeKI GCWGC 2 cut(s) 377, 528
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 64, 66
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 547
AvaII GGWCC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 364, 540
BccI CCATC 1 cut(s) 452
BceAI ACGGC 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 5, 398
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 345, 378
BfuAI ACCTGC 2 cut(s) 324, 371
BglII AGATCT 1 cut(s) 291
BisI GCNGC 2 cut(s) 378, 529
BlsI GCNGC 2 cut(s) 379, 530
BmcAI AGTACT 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmsI GCATC 2 cut(s) 515, 619
BpuEI CTTGAG 1 cut(s) 626
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 192, 417
Bse1I ACTGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 192, 417
BseGI GGATG 3 cut(s) 427, 463, 530
BseMII CTCAG 3 cut(s) 187, 216, 381
BseNI ACTGG 1 cut(s) 237
BsePI GCGCGC 1 cut(s) 62
BseXI GCAGC 2 cut(s) 364, 540
Bsh1236I CGCG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 5, 398
BsmBI CGTCTC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 4
Bso31I GGTCTC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 90, 228, 291, 461
Bsp19I CCATGG 2 cut(s) 192, 417
BspACI CCGC 2 cut(s) 319, 522
BspCNI CTCAG 3 cut(s) 186, 217, 382
BspFNI CGCG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 382
BspMI ACCTGC 2 cut(s) 324, 371
BspPI GGATC 2 cut(s) 98, 469
BspTNI GGTCTC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 192, 417
BssHII GCGCGC 1 cut(s) 62
BssMI GATC 4 cut(s) 90, 228, 291, 461
BssT1I CCWWGG 2 cut(s) 192, 417
Bst4CI ACNGT 4 cut(s) 346, 409, 454, 499
BstC8I GCNNGC 2 cut(s) 64, 520
BstDEI CTNAG 3 cut(s) 173, 225, 390
BstDSI CCRYGG 2 cut(s) 192, 417
BstF5I GGATG 3 cut(s) 427, 463, 530
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 2 cut(s) 64, 66
BstKTI GATC 4 cut(s) 93, 231, 294, 464
BstMAI GTCTC 2 cut(s) 5, 398
BstMBI GATC 4 cut(s) 90, 228, 291, 461
BstMWI GCNNNNNNNGC 2 cut(s) 203, 528
BstSFI CTRYAG 2 cut(s) 345, 378
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 364, 540
BstX2I RGATCY 2 cut(s) 90, 291
BstYI RGATCY 2 cut(s) 90, 291
BtgI CCRYGG 2 cut(s) 192, 417
BtsCI GGATG 3 cut(s) 427, 463, 530
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 2 cut(s) 244, 368
BveI ACCTGC 2 cut(s) 324, 371
Cac8I GCNNGC 2 cut(s) 64, 520
CfoI GCGC 2 cut(s) 64, 66
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 3 cut(s) 102, 277, 323
CviAII CATG 4 cut(s) 25, 193, 304, 418
CviQI GTAC 3 cut(s) 102, 277, 323
DdeI CTNAG 3 cut(s) 173, 225, 390
DpnI GATC 4 cut(s) 92, 230, 293, 463
DpnII GATC 4 cut(s) 90, 228, 291, 461
EciI GGCGGA 1 cut(s) 537
Eco130I CCWWGG 2 cut(s) 192, 417
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 192, 417
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 192, 417
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 4 cut(s) 28, 196, 307, 421
FaiI YATR 8 cut(s) 26, 98, 194, 305, 419, 488, 548, 555
FatI CATG 4 cut(s) 24, 192, 303, 417
FauI CCCGC 1 cut(s) 312
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 378, 529
FokI GGATG 3 cut(s) 434, 470, 537
Fsp4HI GCNGC 2 cut(s) 378, 529
FspBI CTAG 1 cut(s) 156
GlaI GCGC 2 cut(s) 63, 65
GluI GCNGC 2 cut(s) 378, 529
HhaI GCGC 2 cut(s) 64, 66
Hin1II CATG 4 cut(s) 28, 196, 307, 421
Hin6I GCGC 2 cut(s) 62, 64
HinP1I GCGC 2 cut(s) 62, 64
HinfI GANTC 1 cut(s) 572
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 2 cut(s) 366, 478
Hpy188I TCNGA 2 cut(s) 10, 391
Hpy188III TCNNGA 4 cut(s) 448, 469, 596, 643
Hpy8I GTNNAC 2 cut(s) 366, 478
HpyAV CCTTC 3 cut(s) 323, 484, 647
HpyCH4III ACNGT 4 cut(s) 346, 409, 454, 499
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 5 cut(s) 4, 214, 380, 398, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 528
HpyF3I CTNAG 3 cut(s) 173, 225, 390
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 4 cut(s) 28, 196, 307, 421
HspAI GCGC 2 cut(s) 62, 64
Kzo9I GATC 4 cut(s) 90, 228, 291, 461
LmnI GCTCC 1 cut(s) 471
LpnPI CCDG 9 cut(s) 15, 250, 312, 329, 366, 482, 488, 504, 581
Lsp1109I GCAGC 2 cut(s) 364, 540
LweI GCATC 2 cut(s) 515, 619
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 505
MalI GATC 4 cut(s) 92, 230, 293, 463
MboI GATC 4 cut(s) 90, 228, 291, 461
MflI RGATCY 2 cut(s) 90, 291
MluCI AATT 2 cut(s) 138, 385
MnlI CCTC 3 cut(s) 133, 562, 591
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 203, 528
NcoI CCATGG 2 cut(s) 192, 417
NdeII GATC 4 cut(s) 90, 228, 291, 461
NlaIII CATG 4 cut(s) 28, 196, 307, 421
NsiI ATGCAT 1 cut(s) 6
PauI GCGCGC 1 cut(s) 62
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 2 cut(s) 379, 530
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 2 cut(s) 90, 291
PteI GCGCGC 1 cut(s) 62
RsaI GTAC 3 cut(s) 103, 278, 324
RsaNI GTAC 3 cut(s) 102, 277, 323
SatI GCNGC 2 cut(s) 378, 529
Sau3AI GATC 4 cut(s) 90, 228, 291, 461
Sau96I GGNCC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 103
SfaNI GCATC 2 cut(s) 515, 619
SfcI CTRYAG 2 cut(s) 345, 378
SinI GGWCC 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 2 cut(s) 138, 385
SsiI CCGC 2 cut(s) 319, 522
SspI AATATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 156
StyI CCWWGG 2 cut(s) 192, 417
TaaI ACNGT 4 cut(s) 346, 409, 454, 499
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 327
TaqII GACCGA 1 cut(s) 343
TasI AATT 2 cut(s) 138, 385
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 572
TscAI CASTG 2 cut(s) 244, 368
TseI GCWGC 2 cut(s) 377, 528
TspDTI ATGAA 3 cut(s) 72, 438, 503
TspRI CASTG 2 cut(s) 244, 368
VpaK11BI GGWCC 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmiI GTMKAC 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 103
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.