Rroxscaffold_159G00432890

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000362
Physical Location & Seq
Reverse (-)
570218 .. 571064
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432890.1

Sequence Viewer

Length: 456 bp
ATGTCTTCTGATTATGGAAAGGTGGAGACCGATGTTGAACTCAAGGCTTCTGCTGCCAAGTTCCACGAGTTCTTTACCAGAAGACCACACCATCTGAGCAACATCAGCTCTGACAAAATTAAGGACTGTAATCTTCATGAAGGTGAATGGGGAACTGTGGGTTCTATCGTCCACTGGAACTATGTCCACGATGGCAAAAGTAAAGTTGCCAAGGAGTTGTTTGAGGCCATAGACGACGAAAACAACTCGATCACACTGAAAGTGGTGGAAGGAGACCTTCTGGAGCATTACAAGAGCTTCAAGATCACCATTCAAGCCTCTCCAAATGGTGAGGGCTGCACTGTGCATTGGACATTTGAATATGAGAAGGTGCACGGCGATGTTGAAGACCCTCATACATTGCTCCAGTTGGCAGTTGATCTCTCCAAAGATATTTGTTCTCACCTAAGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

151

Amino Acids

17.05

Weight (kDa)

5.35

Isoelectric Point (pI)

18.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 6 - 150 2.6e-52 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 7 - 129 7.7e-08 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 5 cut(s) 38, 301, 314, 359, 386
AluBI AGCT 2 cut(s) 108, 297
AluI AGCT 2 cut(s) 108, 297
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 20, 267
Alw44I GTGCAC 1 cut(s) 371
AoxI GGCC 1 cut(s) 225
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 53, 336
AsuHPI GGTGA 4 cut(s) 155, 298, 341, 434
BaeGI GKGCMC 1 cut(s) 375
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 88, 393
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 40, 323
BccI CCATC 2 cut(s) 99, 185
BceAI ACGGC 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 20, 267
BisI GCNGC 2 cut(s) 54, 337
BlsI GCNGC 2 cut(s) 55, 338
BpiI GAAGAC 2 cut(s) 88, 393
BpmI CTGGAG 2 cut(s) 302, 389
Bpu10I CCTNAGC 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 26
BsaI GGTCTC 2 cut(s) 20, 267
BsaJI CCNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 179, 406
Bse3DI GCAATG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 179, 406
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 2 cut(s) 40, 323
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 375
BsmAI GTCTC 2 cut(s) 20, 267
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 2 cut(s) 20, 267
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 249, 303, 418
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 87
BspHI TCATGA 1 cut(s) 136
BspTNI GGTCTC 2 cut(s) 20, 267
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 2 cut(s) 179, 406
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 3 cut(s) 249, 303, 418
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 65
Bst4CI ACNGT 3 cut(s) 128, 157, 343
BstDEI CTNAG 2 cut(s) 95, 446
BstKTI GATC 3 cut(s) 252, 306, 421
BstMAI GTCTC 2 cut(s) 20, 267
BstMBI GATC 3 cut(s) 249, 303, 418
BstMWI GCNNNNNNNGC 2 cut(s) 53, 105
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 40, 323
BstV2I GAAGAC 2 cut(s) 88, 393
BsuRI GGCC 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 393
BtsIMutI CAGTG 3 cut(s) 172, 254, 339
CciI TCATGA 1 cut(s) 136
CviAII CATG 1 cut(s) 137
CviJI RGCY 6 cut(s) 47, 108, 227, 297, 317, 336
CviKI_1 RGCY 6 cut(s) 47, 108, 227, 297, 317, 336
DdeI CTNAG 2 cut(s) 95, 446
DpnI GATC 3 cut(s) 251, 305, 420
DpnII GATC 3 cut(s) 249, 303, 418
Eco130I CCWWGG 1 cut(s) 210
Eco31I GGTCTC 2 cut(s) 20, 267
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 140
FaiI YATR 6 cut(s) 15, 138, 183, 230, 363, 396
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 54, 337
Fsp4HI GCNGC 2 cut(s) 54, 337
GluI GCNGC 2 cut(s) 54, 337
GsuI CTGGAG 2 cut(s) 302, 389
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 1 cut(s) 140
HphI GGTGA 4 cut(s) 155, 298, 341, 434
Hpy166II GTNNAC 3 cut(s) 172, 187, 373
Hpy188I TCNGA 3 cut(s) 10, 96, 112
Hpy188III TCNNGA 3 cut(s) 137, 281, 301
Hpy8I GTNNAC 3 cut(s) 172, 187, 373
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 134, 263, 287, 361
HpyCH4III ACNGT 3 cut(s) 128, 157, 343
HpyCH4V TGCA 3 cut(s) 339, 346, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 105
HpyF3I CTNAG 2 cut(s) 95, 446
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 3 cut(s) 249, 303, 418
LmnI GCTCC 2 cut(s) 283, 408
LpnPI CCDG 4 cut(s) 91, 160, 266, 419
Lsp1109I GCAGC 2 cut(s) 40, 323
MalI GATC 3 cut(s) 251, 305, 420
MboI GATC 3 cut(s) 249, 303, 418
MboII GAAGA 3 cut(s) 93, 125, 398
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 1 cut(s) 117
MnlI CCTC 4 cut(s) 217, 325, 328, 402
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 2 cut(s) 141, 378
MwoI GCNNNNNNNGC 2 cut(s) 53, 105
NdeII GATC 3 cut(s) 249, 303, 418
NlaIII CATG 1 cut(s) 140
PagI TCATGA 1 cut(s) 136
PkrI GCNGC 2 cut(s) 55, 338
RseI CAYNNNNRTG 2 cut(s) 141, 378
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 54, 337
Sau3AI GATC 3 cut(s) 249, 303, 418
SduI GDGCHC 1 cut(s) 375
SetI ASST 8 cut(s) 24, 110, 145, 279, 299, 372, 447, 455
SmiMI CAYNNNNRTG 2 cut(s) 141, 378
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 117
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 128, 157, 343
TaqI TCGA 1 cut(s) 248
TaqII GACCGA 1 cut(s) 44
TasI AATT 1 cut(s) 117
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 3 cut(s) 179, 261, 346
TseI GCWGC 2 cut(s) 53, 336
TspDTI ATGAA 2 cut(s) 125, 153
TspRI CASTG 3 cut(s) 179, 261, 346
VneI GTGCAC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.