RchiOBHm_Chr4g0392611

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000362
Physical Location & Seq
Reverse (-)
8166133 .. 8166891
759 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36534

Sequence Viewer

Length: 465 bp
ATGTCGTCATCTAGGTTCGGTAAGCAGGAGGTGGATATTGAAATCAAGGCTCCTGCTGAAAGATTCTTTGAATTCATAACGCCGAAAACACACATGTTATCGAATACCAGTCCTGATAAAGTTGTGAGTTGTGAATTGCTTGAAGGTGACTGGGGAAGTCATCTCCTGGAATTATATGGGAATGCTAGAGCTGGCAAGGAGTTGCTTGAAGCCGTAGACATCGAAAGAAATTCGGTAACTTATAGAGTTATCGATGGATACTTGCTGCAGTATTACAAGAGCTTCAAGAGAAGTTGTGAAGCCACCACAAAAGGAAAAGGAGAAGAAGAGGGAACCCGTGTTCACTGGACTCTGGAATATGAGAAGCTGCATGACAAAGTTCCGGAGCCACATACCAAGCTCCAGCTCATACTGGATCTCGTCAAAGATTTTGATGTTCACCCTAGTAGCCAAGAATATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

154

Amino Acids

17.75

Weight (kDa)

5.39

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 7 - 147 8e-31 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 10 - 127 1.9e-08 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 382
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 2 cut(s) 71, 229
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 5 cut(s) 41, 71, 143, 209, 286
AjnI CCWGG 1 cut(s) 165
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 5 cut(s) 191, 282, 367, 400, 406
AluI AGCT 5 cut(s) 191, 282, 367, 400, 406
AlwI GGATC 1 cut(s) 423
Aor13HI TCCGGA 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 265, 367
ApoI RAATTY 2 cut(s) 71, 229
AsuHPI GGTGA 2 cut(s) 158, 431
BbvI GCAGC 2 cut(s) 252, 354
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 167
BciVI GTATCC 1 cut(s) 251
BfaI CTAG 3 cut(s) 12, 186, 444
BfmI CTRYAG 1 cut(s) 266
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 2 cut(s) 266, 368
BlsI GCNGC 2 cut(s) 267, 369
Bme1390I CCNGG 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 51, 334, 387
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 160
BmuI ACTGGG 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 382
Bse1I ACTGG 4 cut(s) 108, 155, 350, 417
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 252
BseNI ACTGG 4 cut(s) 108, 155, 350, 417
BseXI GCAGC 2 cut(s) 252, 354
BshVI ATCGAT 1 cut(s) 252
BsiSI CCGG 1 cut(s) 383
BsmI GAATGC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 252
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 51, 334, 387
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 1 cut(s) 423
BsrI ACTGG 4 cut(s) 108, 155, 350, 417
BssMI GATC 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 193
BstKTI GATC 1 cut(s) 418
BstMBI GATC 1 cut(s) 415
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 252, 354
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 252
BsuI GTATCC 1 cut(s) 251
BsuTUI ATCGAT 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 193
ClaI ATCGAT 1 cut(s) 252
CviAII CATG 2 cut(s) 94, 371
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 97, 374
FatI CATG 2 cut(s) 93, 370
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 266, 368
Fsp4HI GCNGC 2 cut(s) 266, 368
FspBI CTAG 3 cut(s) 12, 186, 444
GluI GCNGC 2 cut(s) 266, 368
GsuI CTGGAG 1 cut(s) 386
HapII CCGG 1 cut(s) 383
Hin1II CATG 2 cut(s) 97, 374
HinfI GANTC 2 cut(s) 63, 349
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 158, 431
Hpy166II GTNNAC 3 cut(s) 217, 343, 439
Hpy188III TCNNGA 4 cut(s) 113, 286, 353, 383
Hpy8I GTNNAC 3 cut(s) 217, 343, 439
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 268, 370
Hsp92II CATG 2 cut(s) 97, 374
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 3 cut(s) 55, 385, 405
Lsp1109I GCAGC 2 cut(s) 252, 354
MaeI CTAG 3 cut(s) 12, 186, 444
MaeIII GTNAC 2 cut(s) 146, 235
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 2 cut(s) 335, 338
MflI RGATCY 1 cut(s) 415
MluCI AATT 4 cut(s) 71, 134, 170, 229
MlyI GAGTC 1 cut(s) 343
MnlI CCTC 2 cut(s) 22, 322
MroI TCCGGA 1 cut(s) 382
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 167
NdeII GATC 1 cut(s) 415
NlaIII CATG 2 cut(s) 97, 374
NlaIV GGNNCC 3 cut(s) 51, 334, 387
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 97
PciI ACATGT 1 cut(s) 93
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 2 cut(s) 267, 369
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PscI ACATGT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 51, 334, 387
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 1 cut(s) 415
SatI GCNGC 2 cut(s) 266, 368
Sau3AI GATC 1 cut(s) 415
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 167
SetI ASST 8 cut(s) 17, 33, 148, 193, 284, 369, 402, 408
SfcI CTRYAG 1 cut(s) 266
Sse9I AATT 4 cut(s) 71, 134, 170, 229
SspMI CTAG 3 cut(s) 12, 186, 444
StyD4I CCNGG 1 cut(s) 165
TaqI TCGA 3 cut(s) 101, 222, 252
TasI AATT 4 cut(s) 71, 134, 170, 229
TfiI GAWTC 1 cut(s) 63
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 265, 367
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 64
TspRI CASTG 1 cut(s) 350
XapI RAATTY 2 cut(s) 71, 229
XceI RCATGY 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 3 cut(s) 12, 186, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.