AT1G35260

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000362
Physical Location & Seq
Reverse (-)
12936849 .. 12937787
939 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35260.1

Sequence Viewer

Length: 459 bp
ATGATAGAAGAGGAGATTGAGGTAGACGTCGATATTAAAACCAGGGCTGACAAGTTCCACAAGTTCATCAGAAGATCACAACATGTGCCCAAAGCCACTCACTACATTAAGGGATGTGATCTGCTCGAAGGCGAGTGGGGAAAAGTTGGAAGCATACTCTTGTGGAAATTAGTTTTTGATGGAGAGCCACGAGTGTCAAAGGATATGATCGAGGTAATAGATGAGGAGAAGAATGTGATTCAGTTGAGGGTGTTAGAGGGACCTCTGAAGAAAGAATACAAGAGCTTCCTGAAAACGATGAAAGTGATGAGCCCTAAGCATGGAGGGCCCGGAAGTGTGGTGAAGTGGAACATGAAATATGAGAGGATTGATCAGAACGTGGATCACCCAAACAGGCTTCTCCAGTTCTTCGTCGAAGTGACTAAAGAGATTGACCAATACCTCTTGTCTAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

152

Amino Acids

17.84

Weight (kDa)

6.98

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 150 3.9e-59 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 24
AclWI GGATC 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 320
AflIII ACRYGT 1 cut(s) 82
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
AlwI GGATC 1 cut(s) 390
AoxI GGCC 1 cut(s) 326
ApaI GGGCCC 1 cut(s) 330
AspS9I GGNCC 3 cut(s) 260, 326, 327
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 352, 377
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 2 cut(s) 90, 330
BanII GRGCYC 2 cut(s) 314, 330
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BauI CACGAG 1 cut(s) 189
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 1 cut(s) 330
Bme1390I CCNGG 2 cut(s) 43, 330
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 3 cut(s) 260, 326, 327
BmiI GGNNCC 2 cut(s) 261, 328
BmrFI CCNGG 2 cut(s) 43, 330
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 403
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 2 cut(s) 26, 239
BseSI GKGCMC 2 cut(s) 90, 330
BshFI GGCC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 1 cut(s) 328
Bsp120I GGGCCC 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 90, 314, 330
Bsp143I GATC 5 cut(s) 74, 118, 207, 370, 382
BspANI GGCC 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 261, 328
BspPI GGATC 1 cut(s) 390
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 5 cut(s) 74, 118, 207, 370, 382
BssNI GRCGYC 1 cut(s) 27
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 315, 450
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 5 cut(s) 77, 121, 210, 373, 385
BstMBI GATC 5 cut(s) 74, 118, 207, 370, 382
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 41, 328
BstSLI GKGCMC 2 cut(s) 90, 330
BsuRI GGCC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 119
Cfr13I GGNCC 3 cut(s) 260, 326, 327
CviAII CATG 3 cut(s) 83, 320, 352
CviJI RGCY 7 cut(s) 47, 95, 187, 285, 312, 328, 397
CviKI_1 RGCY 7 cut(s) 47, 95, 187, 285, 312, 328, 397
DdeI CTNAG 2 cut(s) 315, 450
DpnI GATC 5 cut(s) 76, 120, 209, 372, 384
DpnII GATC 5 cut(s) 74, 118, 207, 370, 382
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco24I GRGCYC 2 cut(s) 314, 330
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 287
EcoO109I RGGNCCY 2 cut(s) 260, 326
EcoRII CCWGG 1 cut(s) 41
EcoT38I GRGCYC 2 cut(s) 314, 330
FaeI CATG 3 cut(s) 86, 323, 355
FaiI YATR 6 cut(s) 84, 155, 206, 321, 353, 360
FaqI GGGAC 1 cut(s) 273
FatI CATG 3 cut(s) 82, 319, 351
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 24
FokI GGATG 1 cut(s) 126
FriOI GRGCYC 2 cut(s) 314, 330
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 1 cut(s) 328
HapII CCGG 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 3 cut(s) 86, 323, 355
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 330
HphI GGTGA 2 cut(s) 352, 377
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 71, 267, 375
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 2 cut(s) 32, 416
HpyAV CCTTC 1 cut(s) 122
HpyCH4IV ACGT 2 cut(s) 27, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 2 cut(s) 315, 450
HpySE526I ACGT 2 cut(s) 27, 378
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 3 cut(s) 86, 323, 355
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 5 cut(s) 74, 118, 207, 370, 382
LpnPI CCDG 6 cut(s) 28, 55, 302, 343, 379, 416
MaeII ACGT 2 cut(s) 27, 378
MaeIII GTNAC 1 cut(s) 418
MalI GATC 5 cut(s) 76, 120, 209, 372, 384
MboI GATC 5 cut(s) 74, 118, 207, 370, 382
MboII GAAGA 5 cut(s) 20, 84, 241, 280, 400
MhlI GDGCHC 3 cut(s) 90, 314, 330
MluCI AATT 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 127
MseI TTAA 3 cut(s) 36, 108, 457
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 2 cut(s) 43, 330
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 325
NciI CCSGG 1 cut(s) 330
NdeII GATC 5 cut(s) 74, 118, 207, 370, 382
NlaIII CATG 3 cut(s) 86, 323, 355
NlaIV GGNNCC 2 cut(s) 261, 328
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 86
PciI ACATGT 1 cut(s) 82
PfeI GAWTC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 260
PscI ACATGT 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 261, 328
PspOMI GGGCCC 1 cut(s) 326
PspPI GGNCC 3 cut(s) 260, 326, 327
PspPPI RGGWCCY 1 cut(s) 260
SaqAI TTAA 3 cut(s) 36, 108, 457
Sau3AI GATC 5 cut(s) 74, 118, 207, 370, 382
Sau96I GGNCC 3 cut(s) 260, 326, 327
ScrFI CCNGG 2 cut(s) 43, 330
SduI GDGCHC 3 cut(s) 90, 314, 330
SetI ASST 7 cut(s) 24, 30, 216, 265, 287, 381, 444
SinI GGWCC 1 cut(s) 260
Sse9I AATT 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 41, 328
TaiI ACGT 2 cut(s) 30, 381
TaqI TCGA 4 cut(s) 30, 126, 210, 414
TasI AATT 1 cut(s) 167
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 3 cut(s) 36, 108, 457
Tru9I TTAA 3 cut(s) 36, 108, 457
TseFI GTSAC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 3 cut(s) 55, 314, 368
VpaK11BI GGWCC 1 cut(s) 260
XceI RCATGY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 24
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.