RchiOBHm_Chr4g0441741

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000362
Physical Location & Seq
Forward (+)
63552379 .. 63553387
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40953

Sequence Viewer

Length: 627 bp
ATGACAGGACTTGGGTATTGGAATATTGTTTCTTTAGCGCGCAGAACCATTCGGCTTTCATTTTGGATCTCTATAAGTACTTATTTAGCTTGGTTTTCCTCAACACTCACACAAATTACAGAAGTAGCTACTAGTGGCTTGACACAACTCAGTCCAATCTCTAACGCCATGGCTCAAATAGCAAAAATGCAAGTTGAAGCTGAGATCAAAGCCAGTGCTGAAAAGTTCTACGAAATCTTTCGTAGCAAAGGGTACTTGTTGCCCAAGATCTGCCCTGACATGATAAAGGACCTGCGGGTACTCGAAGGGGATTGGGGAACTGTAGGCTCGGTCAAGCAGTGGACTTACGTTGCTGCAGGTAATTCTGAGATTGCAAAAGAGACGGTTGAAGCCATGGATGAAAAAGCCAAATCAATCACTTTCAAGACGGTGGATGGATCGCTCCTGAAAGTCTACAAGAATATGAAGGCTACGGTTCAGGTTACGGCAAAGGCTGGCGGATGCAGCTCGGTGAAATGGAGTATAGAATATGAGAAGCTGAACGAGGATTCTCCACCTCCCAATAAGTATCTGGACTTTGTTCTCATTCTCAATAAAAAGGTTGATGCCTACCTTCTCAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

208

Amino Acids

23.24

Weight (kDa)

9.15

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 61 - 207 1.9e-46 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 62 - 184 1.7e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 300, 347
AccI GTMKAC 1 cut(s) 453
AccII CGCG 1 cut(s) 40
AciI CCGC 2 cut(s) 295, 498
AclWI GGATC 2 cut(s) 74, 445
AfaI GTAC 3 cut(s) 79, 254, 300
AgsI TTSAA 3 cut(s) 197, 389, 424
AhlI ACTAGT 1 cut(s) 131
AluBI AGCT 5 cut(s) 89, 128, 200, 507, 538
AluI AGCT 5 cut(s) 89, 128, 200, 507, 538
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 2 cut(s) 74, 445
ApeKI GCWGC 2 cut(s) 353, 504
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 2 cut(s) 40, 42
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 340, 516
BccI CCATC 1 cut(s) 428
BceAI ACGGC 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 374
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 2 cut(s) 321, 354
BfuAI ACCTGC 2 cut(s) 300, 347
BglII AGATCT 1 cut(s) 267
BisI GCNGC 2 cut(s) 354, 505
BlsI GCNGC 2 cut(s) 355, 506
BmcAI AGTACT 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmsI GCATC 2 cut(s) 491, 595
BpuEI CTTGAG 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 168, 393
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 168, 393
BseGI GGATG 3 cut(s) 403, 439, 506
BseMII CTCAG 3 cut(s) 163, 192, 357
BseNI ACTGG 1 cut(s) 213
BsePI GCGCGC 1 cut(s) 38
BseXI GCAGC 2 cut(s) 340, 516
Bsh1236I CGCG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 374
BsmBI CGTCTC 1 cut(s) 374
Bsp143I GATC 4 cut(s) 66, 204, 267, 437
Bsp19I CCATGG 2 cut(s) 168, 393
BspACI CCGC 2 cut(s) 295, 498
BspCNI CTCAG 3 cut(s) 162, 193, 358
BspFNI CGCG 1 cut(s) 40
BspMAI CTGCAG 1 cut(s) 358
BspMI ACCTGC 2 cut(s) 300, 347
BspPI GGATC 2 cut(s) 74, 445
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 168, 393
BssHII GCGCGC 1 cut(s) 38
BssMI GATC 4 cut(s) 66, 204, 267, 437
BssT1I CCWWGG 2 cut(s) 168, 393
Bst4CI ACNGT 4 cut(s) 322, 385, 430, 475
BstC8I GCNNGC 2 cut(s) 40, 496
BstDEI CTNAG 3 cut(s) 149, 201, 366
BstDSI CCRYGG 2 cut(s) 168, 393
BstF5I GGATG 3 cut(s) 403, 439, 506
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 2 cut(s) 40, 42
BstKTI GATC 4 cut(s) 69, 207, 270, 440
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 4 cut(s) 66, 204, 267, 437
BstMWI GCNNNNNNNGC 2 cut(s) 179, 504
BstSFI CTRYAG 2 cut(s) 321, 354
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 340, 516
BstX2I RGATCY 2 cut(s) 66, 267
BstYI RGATCY 2 cut(s) 66, 267
BtgI CCRYGG 2 cut(s) 168, 393
BtsCI GGATG 3 cut(s) 403, 439, 506
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 2 cut(s) 220, 344
BveI ACCTGC 2 cut(s) 300, 347
Cac8I GCNNGC 2 cut(s) 40, 496
CfoI GCGC 2 cut(s) 40, 42
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 3 cut(s) 78, 253, 299
CviAII CATG 3 cut(s) 169, 280, 394
CviQI GTAC 3 cut(s) 78, 253, 299
DdeI CTNAG 3 cut(s) 149, 201, 366
DpnI GATC 4 cut(s) 68, 206, 269, 439
DpnII GATC 4 cut(s) 66, 204, 267, 437
EciI GGCGGA 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 168, 393
Eco47I GGWCC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 168, 393
ErhI CCWWGG 2 cut(s) 168, 393
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 3 cut(s) 172, 283, 397
FaiI YATR 7 cut(s) 74, 170, 281, 395, 464, 524, 531
FatI CATG 3 cut(s) 168, 279, 393
FauI CCCGC 1 cut(s) 288
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 2 cut(s) 354, 505
FokI GGATG 3 cut(s) 410, 446, 513
Fsp4HI GCNGC 2 cut(s) 354, 505
FspBI CTAG 1 cut(s) 132
GlaI GCGC 2 cut(s) 39, 41
GluI GCNGC 2 cut(s) 354, 505
HhaI GCGC 2 cut(s) 40, 42
Hin1II CATG 3 cut(s) 172, 283, 397
Hin6I GCGC 2 cut(s) 38, 40
HinP1I GCGC 2 cut(s) 38, 40
HinfI GANTC 1 cut(s) 548
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 2 cut(s) 342, 454
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 4 cut(s) 424, 445, 572, 619
Hpy8I GTNNAC 2 cut(s) 342, 454
HpyAV CCTTC 3 cut(s) 299, 460, 623
HpyCH4III ACNGT 4 cut(s) 322, 385, 430, 475
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 4 cut(s) 190, 356, 374, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 504
HpyF3I CTNAG 3 cut(s) 149, 201, 366
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 3 cut(s) 172, 283, 397
HspAI GCGC 2 cut(s) 38, 40
Kzo9I GATC 4 cut(s) 66, 204, 267, 437
LmnI GCTCC 1 cut(s) 447
LpnPI CCDG 8 cut(s) 226, 288, 305, 342, 458, 464, 480, 557
Lsp1109I GCAGC 2 cut(s) 340, 516
LweI GCATC 2 cut(s) 491, 595
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 481
MalI GATC 4 cut(s) 68, 206, 269, 439
MboI GATC 4 cut(s) 66, 204, 267, 437
MflI RGATCY 2 cut(s) 66, 267
MluCI AATT 2 cut(s) 114, 361
MnlI CCTC 3 cut(s) 109, 538, 567
MroXI GAANNNNTTC 1 cut(s) 237
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 179, 504
NcoI CCATGG 2 cut(s) 168, 393
NdeII GATC 4 cut(s) 66, 204, 267, 437
NlaIII CATG 3 cut(s) 172, 283, 397
PauI GCGCGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 2 cut(s) 355, 506
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 66, 267
PteI GCGCGC 1 cut(s) 38
RsaI GTAC 3 cut(s) 79, 254, 300
RsaNI GTAC 3 cut(s) 78, 253, 299
SatI GCNGC 2 cut(s) 354, 505
Sau3AI GATC 4 cut(s) 66, 204, 267, 437
Sau96I GGNCC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 79
SfaNI GCATC 2 cut(s) 491, 595
SfcI CTRYAG 2 cut(s) 321, 354
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 2 cut(s) 114, 361
SsiI CCGC 2 cut(s) 295, 498
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 168, 393
TaaI ACNGT 4 cut(s) 322, 385, 430, 475
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 303
TaqII GACCGA 1 cut(s) 319
TasI AATT 2 cut(s) 114, 361
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 1 cut(s) 548
TscAI CASTG 2 cut(s) 220, 344
TseI GCWGC 2 cut(s) 353, 504
TspDTI ATGAA 3 cut(s) 48, 414, 479
TspRI CASTG 2 cut(s) 220, 344
VpaK11BI GGWCC 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.