Rmu_ssc0000486.1_g000033

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000486.1
OG0000362
Physical Location & Seq
Reverse (-)
132095 .. 132546
452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000486.1_g000033.1.cds

Sequence Viewer

Length: 366 bp
atgtcagctccaacaacattcaaggctgtgacttacatgaaggtgactggggaacagtcggtattatcatctactggaattacttccatgatgggaaagctagctagagttgccaaggaaagaattgaagccatagacgcggaaaaaaacttggtgactttcagagtaattgagggagatcttatggagcattacaagagcttcttgatcaccattcaagccactccgaaaggtgagggctgctccgtgcactggactatggagtatgagaagcatcatggcgatattaccgacccacatacgctgctccagtttgcagtcgaggtttctaacgatatcgatgttcaccttactgcccaagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

121

Amino Acids

13.48

Weight (kDa)

5.45

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 3 cut(s) 22, 128, 218
AluBI AGCT 4 cut(s) 8, 100, 104, 201
AluI AGCT 4 cut(s) 8, 100, 104, 201
Alw21I GWGCWC 1 cut(s) 252
Alw44I GTGCAC 1 cut(s) 248
ApaLI GTGCAC 1 cut(s) 248
ApeKI GCWGC 2 cut(s) 240, 304
Asp700I GAANNNNTTC 1 cut(s) 82
AsuHPI GGTGA 5 cut(s) 55, 166, 202, 245, 338
AsuNHI GCTAGC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 227, 291
BccI CCATC 1 cut(s) 85
BclI TGATCA 1 cut(s) 207
BfaI CTAG 2 cut(s) 101, 105
BglII AGATCT 1 cut(s) 178
BisI GCNGC 2 cut(s) 241, 305
BlsI GCNGC 2 cut(s) 242, 306
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 283
BmtI GCTAGC 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 293
Bsa29I ATCGAT 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 4 cut(s) 52, 79, 257, 310
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 252
BseNI ACTGG 4 cut(s) 52, 79, 257, 310
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 2 cut(s) 227, 291
Bsh1236I CGCG 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 178, 207
BspACI CCGC 1 cut(s) 140
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 1 cut(s) 140
BspOI GCTAGC 1 cut(s) 104
BsrI ACTGG 4 cut(s) 52, 79, 257, 310
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 178, 207
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 102
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 2 cut(s) 181, 210
BstMBI GATC 2 cut(s) 178, 207
BstMWI GCNNNNNNNGC 2 cut(s) 110, 137
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 227, 291
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 339
BsuTUI ATCGAT 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 1 cut(s) 146
CviAII CATG 3 cut(s) 37, 88, 278
CviJI RGCY 8 cut(s) 8, 26, 100, 104, 131, 201, 221, 240
CviKI_1 RGCY 8 cut(s) 8, 26, 100, 104, 131, 201, 221, 240
DpnI GATC 2 cut(s) 180, 209
DpnII GATC 2 cut(s) 178, 207
Eco130I CCWWGG 1 cut(s) 114
Eco32I GATATC 1 cut(s) 337
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 40, 91, 281
FaiI YATR 8 cut(s) 38, 89, 134, 185, 260, 267, 279, 300
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 3 cut(s) 36, 87, 277
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 241, 305
Fsp4HI GCNGC 2 cut(s) 241, 305
FspBI CTAG 2 cut(s) 101, 105
GluI GCNGC 2 cut(s) 241, 305
GsuI CTGGAG 1 cut(s) 293
HgaI GACGC 1 cut(s) 146
Hin1II CATG 3 cut(s) 40, 91, 281
HphI GGTGA 5 cut(s) 55, 166, 202, 245, 338
Hpy166II GTNNAC 2 cut(s) 250, 346
Hpy188I TCNGA 2 cut(s) 164, 228
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 2 cut(s) 250, 346
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 250, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 137
Hsp92II CATG 3 cut(s) 40, 91, 281
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 2 cut(s) 178, 207
LmnI GCTCC 4 cut(s) 13, 187, 248, 312
LpnPI CCDG 4 cut(s) 33, 60, 238, 323
Lsp1109I GCAGC 2 cut(s) 227, 291
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 101, 105
MaeIII GTNAC 3 cut(s) 28, 43, 154
MalI GATC 2 cut(s) 180, 209
MboI GATC 2 cut(s) 178, 207
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 3 cut(s) 78, 123, 168
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 3 cut(s) 166, 229, 316
MroXI GAANNNNTTC 1 cut(s) 82
MslI CAYNNNNRTG 1 cut(s) 41
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 110, 137
NdeII GATC 2 cut(s) 178, 207
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 3 cut(s) 40, 91, 281
NmuCI GTSAC 3 cut(s) 28, 43, 154
PdmI GAANNNNTTC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 242, 306
PsuI RGATCY 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 2 cut(s) 241, 305
Sau3AI GATC 2 cut(s) 178, 207
SduI GDGCHC 1 cut(s) 252
SetI ASST 8 cut(s) 10, 45, 102, 106, 203, 235, 327, 351
SfaNI GCATC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 3 cut(s) 78, 123, 168
SsiI CCGC 1 cut(s) 140
SspMI CTAG 2 cut(s) 101, 105
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 321, 339
TasI AATT 3 cut(s) 78, 123, 168
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 3 cut(s) 28, 43, 154
TseI GCWGC 2 cut(s) 240, 304
Tsp45I GTSAC 3 cut(s) 28, 43, 154
TspDTI ATGAA 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 257
VneI GTGCAC 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 101, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.