Rorug03G0339500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000362
Physical Location & Seq
Forward (+)
40441146 .. 40442709
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0339500.1

Sequence Viewer

Length: 1026 bp
ATGGGAAGGCCTCCTTGCTGTGAGAAGGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAGGATATCATTCTTGTTTCTTACATCCAAGAACATGGTCCAGGCAATTGGAGAGCAGTGCCAACCAACACTGGGTTGTTGAGGTGCAGCAAGAGTTGCAGGCTTAGATGGACTAACTATCTCAGACCTGGAATCAAGAGAGGGAACTTCACACCTCATGAAGAAGGGATGATAATTCATTTGCAAGCTTTATTGGGTAACAAATGGGCAGCTATAGCTTCTTACCTCCCACAAAGAACAGACAATGATATAAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTCAAGAAGATTCAGTCAGCTGTTGATCATCATCATCAGCAGCATCCTCAGGCTGAAAATAATATATTGGGATCATCTATATCAGACTCGACCACAAGTAATTCTACTCATCATCAATATCCTCACAGGAATAATGTCAATGACATCACAAGCCATGCTTCGACAACAACTCTCAGTCTCAGGTCCATAAACCAGTCCTCCTCCTCCTCCAGTGGTATATATGCCTCCAGCACCGAGAACATTTCGCGACTCCTTGAAGGATGGATGAGAACCTCCCCAAAGAGTACTAACGCTAACCTTGTAACCAAACCATCTCATGATCGTGAAGAAAACCCAAAAGGTGGCCAAGACCAAGATGAAGTCTGTGATCATGATCTTTTATCTCATGAAGCATTCGAATCGATTTTGTCCTTCGACAACTTGAATAATGTTAATGCTGCTTCCTGGGACAGGTCTAGTACTACTAATTGTGATTCTAGTTCTATCAAGCAGGTGTCTCAAACCCAATGTAGTACTGCAGCTGCCATTGCAAATGAGAAGGATAAGCACATTATTAGAGCCTGTGAAAGCACGAACACTCCTCCATTATCATTTCTTGAGAAATGGCTTCTGGATGAAAGTGCTGCTGGACAAGTACTAGAGGATCGAATGATGGAATTGTCTCCAATTTCCTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

341

Amino Acids

38.02

Weight (kDa)

6.76

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.2e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 9.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 119 2.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 826
Acc36I ACCTGC 1 cut(s) 826
AccB7I CCANNNNNTGG 1 cut(s) 686
AccII CGCG 1 cut(s) 592
AclWI GGATC 2 cut(s) 424, 996
AcoI YGGCCR 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 4 cut(s) 631, 805, 859, 981
AfiI CCNNNNNNNGG 3 cut(s) 132, 686, 795
AgsI TTSAA 3 cut(s) 337, 602, 769
AjnI CCWGG 3 cut(s) 100, 187, 788
AluBI AGCT 6 cut(s) 248, 272, 278, 346, 365, 866
AluI AGCT 6 cut(s) 248, 272, 278, 346, 365, 866
Alw26I GTCTC 3 cut(s) 527, 846, 1011
AlwI GGATC 2 cut(s) 424, 996
AoxI GGCC 2 cut(s) 8, 688
ApeKI GCWGC 7 cut(s) 147, 269, 385, 782, 863, 866, 968
AspS9I GGNCC 3 cut(s) 44, 98, 528
AsuII TTCGAA 1 cut(s) 741
AvaII GGWCC 3 cut(s) 44, 98, 528
AxyI CCTNAGG 1 cut(s) 393
BalI TGGCCA 1 cut(s) 690
BbvI GCAGC 7 cut(s) 159, 281, 397, 769, 853, 875, 955
BccI CCATC 4 cut(s) 162, 600, 664, 991
BcgI CGANNNNNNTGC 2 cut(s) 726, 760
BciT130I CCWGG 3 cut(s) 102, 189, 790
BclI TGATCA 2 cut(s) 370, 712
BcoDI GTCTC 3 cut(s) 527, 846, 1011
BfaI CTAG 3 cut(s) 801, 822, 983
BfmI CTRYAG 2 cut(s) 273, 861
BfuAI ACCTGC 1 cut(s) 826
BisI GCNGC 7 cut(s) 148, 270, 386, 783, 864, 867, 969
BlsI GCNGC 7 cut(s) 149, 271, 387, 784, 865, 868, 970
BmcAI AGTACT 4 cut(s) 631, 805, 859, 981
Bme1390I CCNGG 3 cut(s) 102, 189, 790
Bme18I GGWCC 3 cut(s) 44, 98, 528
BmgT120I GGNCC 3 cut(s) 44, 98, 528
BmrFI CCNGG 3 cut(s) 102, 189, 790
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 42, 397
BmuI ACTGGG 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 538, 556
Bpu14I TTCGAA 1 cut(s) 741
BpuEI CTTGAG 2 cut(s) 332, 962
Bsa29I ATCGAT 1 cut(s) 746
BsaBI GATNNNNATC 2 cut(s) 375, 717
BsaJI CCNNGG 3 cut(s) 47, 789, 1017
BsaXI ACNNNNNCTCC 4 cut(s) 527, 557, 907, 937
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 686, 795
Bse1I ACTGG 4 cut(s) 136, 326, 538, 555
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 870
Bse8I GATNNNNATC 2 cut(s) 375, 717
BseBI CCWGG 3 cut(s) 102, 189, 790
BseCI ATCGAT 1 cut(s) 746
BseDI CCNNGG 3 cut(s) 47, 789, 1017
BseGI GGATG 6 cut(s) 84, 234, 388, 611, 615, 964
BseJI GATNNNNATC 2 cut(s) 375, 717
BseLI CCNNNNNNNGG 3 cut(s) 132, 686, 795
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 4 cut(s) 196, 407, 532, 538
BseNI ACTGG 4 cut(s) 136, 326, 538, 555
BseRI GAGGAG 4 cut(s) 535, 538, 541, 915
BseXI GCAGC 7 cut(s) 159, 281, 397, 769, 853, 875, 955
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 592
BshFI GGCC 2 cut(s) 10, 690
BshVI ATCGAT 1 cut(s) 746
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 3 cut(s) 132, 686, 795
BsmAI GTCTC 3 cut(s) 527, 846, 1011
BsmFI GGGAC 1 cut(s) 806
BsmI GAATGC 1 cut(s) 737
BsnI GGCC 2 cut(s) 10, 690
Bsp119I TTCGAA 1 cut(s) 741
Bsp143I GATC 6 cut(s) 370, 416, 664, 712, 718, 988
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 592
BspANI GGCC 2 cut(s) 10, 690
BspCNI CTCAG 4 cut(s) 195, 406, 531, 537
BspDI ATCGAT 1 cut(s) 746
BspFNI CGCG 1 cut(s) 592
BspHI TCATGA 4 cut(s) 217, 661, 715, 730
BspMAI CTGCAG 1 cut(s) 865
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 2 cut(s) 424, 996
BspT104I TTCGAA 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 4 cut(s) 136, 326, 538, 555
BssECI CCNNGG 3 cut(s) 47, 789, 1017
BssMI GATC 6 cut(s) 370, 416, 664, 712, 718, 988
BssT1I CCWWGG 2 cut(s) 47, 1017
Bst2UI CCWGG 3 cut(s) 102, 189, 790
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 2 cut(s) 161, 246
BstDEI CTNAG 5 cut(s) 164, 182, 393, 518, 524
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 793
BstF5I GGATG 6 cut(s) 84, 234, 388, 611, 615, 964
BstFNI CGCG 1 cut(s) 592
BstKTI GATC 6 cut(s) 373, 419, 667, 715, 721, 991
BstMAI GTCTC 3 cut(s) 527, 846, 1011
BstMBI GATC 6 cut(s) 370, 416, 664, 712, 718, 988
BstMWI GCNNNNNNNGC 3 cut(s) 156, 275, 872
BstNI CCWGG 3 cut(s) 102, 189, 790
BstSCI CCNGG 3 cut(s) 100, 187, 788
BstSFI CTRYAG 2 cut(s) 273, 861
BstUI CGCG 1 cut(s) 592
BstV1I GCAGC 7 cut(s) 159, 281, 397, 769, 853, 875, 955
BstXI CCANNNNNNTGG 2 cut(s) 95, 108
Bsu15I ATCGAT 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 2 cut(s) 10, 690
BsuTUI ATCGAT 1 cut(s) 746
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 6 cut(s) 84, 234, 388, 611, 615, 964
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 3 cut(s) 123, 129, 562
BtuMI TCGCGA 1 cut(s) 592
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 2 cut(s) 161, 246
CciI TCATGA 4 cut(s) 217, 661, 715, 730
Cfr13I GGNCC 3 cut(s) 44, 98, 528
ClaI ATCGAT 1 cut(s) 746
Csp6I GTAC 4 cut(s) 630, 804, 858, 980
CviAII CATG 7 cut(s) 48, 95, 218, 500, 662, 716, 731
CviQI GTAC 4 cut(s) 630, 804, 858, 980
DdeI CTNAG 5 cut(s) 164, 182, 393, 518, 524
DpnI GATC 6 cut(s) 372, 418, 666, 714, 720, 990
DpnII GATC 6 cut(s) 370, 416, 664, 712, 718, 988
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 47, 1017
Eco147I AGGCCT 1 cut(s) 10
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 44, 98, 528
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 793
EcoRII CCWGG 3 cut(s) 100, 187, 788
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 47, 1017
ErhI CCWWGG 2 cut(s) 47, 1017
FaeI CATG 7 cut(s) 51, 98, 221, 503, 665, 719, 734
FalI AAGNNNNNCTT 3 cut(s) 30, 487, 519
FaqI GGGAC 1 cut(s) 806
FatI CATG 7 cut(s) 47, 94, 217, 499, 661, 715, 730
FbaI TGATCA 2 cut(s) 370, 712
Fnu4HI GCNGC 7 cut(s) 148, 270, 386, 783, 864, 867, 969
FokI GGATG 6 cut(s) 71, 241, 375, 618, 622, 971
Fsp4HI GCNGC 7 cut(s) 148, 270, 386, 783, 864, 867, 969
FspBI CTAG 3 cut(s) 801, 822, 983
GluI GCNGC 7 cut(s) 148, 270, 386, 783, 864, 867, 969
GsuI CTGGAG 2 cut(s) 538, 556
HaeIII GGCC 2 cut(s) 10, 690
Hin1II CATG 7 cut(s) 51, 98, 221, 503, 665, 719, 734
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 6 cut(s) 192, 355, 431, 594, 743, 818
Hpy188I TCNGA 2 cut(s) 185, 430
HpyAV CCTTC 5 cut(s) 19, 218, 596, 766, 877
HpyCH4V TGCA 5 cut(s) 147, 159, 244, 863, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 275, 872
HpyF3I CTNAG 5 cut(s) 164, 182, 393, 518, 524
Hsp92II CATG 7 cut(s) 51, 98, 221, 503, 665, 719, 734
Ksp22I TGATCA 2 cut(s) 370, 712
Kzo9I GATC 6 cut(s) 370, 416, 664, 712, 718, 988
Lsp1109I GCAGC 7 cut(s) 159, 281, 397, 769, 853, 875, 955
LweI GCATC 2 cut(s) 42, 397
MaeI CTAG 3 cut(s) 801, 822, 983
MaeIII GTNAC 2 cut(s) 257, 646
MalI GATC 6 cut(s) 372, 418, 666, 714, 720, 990
MboI GATC 6 cut(s) 370, 416, 664, 712, 718, 988
MboII GAAGA 6 cut(s) 71, 233, 349, 352, 364, 683
MfeI CAATTG 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 7 cut(s) 106, 234, 316, 445, 811, 1001, 1011
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 2 cut(s) 425, 588
Mox20I TGGCCA 1 cut(s) 690
MscI TGGCCA 1 cut(s) 690
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 2 cut(s) 365, 866
MspR9I CCNGG 3 cut(s) 102, 189, 790
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 737
MvaI CCWGG 3 cut(s) 102, 189, 790
MvnI CGCG 1 cut(s) 592
MwoI GCNNNNNNNGC 3 cut(s) 156, 275, 872
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 370, 416, 664, 712, 718, 988
NlaIII CATG 7 cut(s) 51, 98, 221, 503, 665, 719, 734
NruI TCGCGA 1 cut(s) 592
NspV TTCGAA 1 cut(s) 741
PagI TCATGA 4 cut(s) 217, 661, 715, 730
PaqCI CACCTGC 1 cut(s) 826
PceI AGGCCT 1 cut(s) 10
PctI GAATGC 1 cut(s) 737
PfeI GAWTC 4 cut(s) 192, 355, 743, 818
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 7 cut(s) 149, 271, 387, 784, 865, 868, 970
PleI GAGTC 2 cut(s) 425, 588
PpsI GAGTC 2 cut(s) 425, 588
Psp6I CCWGG 3 cut(s) 100, 187, 788
PspGI CCWGG 3 cut(s) 100, 187, 788
PspPI GGNCC 3 cut(s) 44, 98, 528
PstI CTGCAG 1 cut(s) 865
PvuII CAGCTG 2 cut(s) 365, 866
RruI TCGCGA 1 cut(s) 592
RsaI GTAC 4 cut(s) 631, 805, 859, 981
RsaNI GTAC 4 cut(s) 630, 804, 858, 980
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 7 cut(s) 148, 270, 386, 783, 864, 867, 969
Sau3AI GATC 6 cut(s) 370, 416, 664, 712, 718, 988
Sau96I GGNCC 3 cut(s) 44, 98, 528
ScaI AGTACT 4 cut(s) 631, 805, 859, 981
SchI GAGTC 2 cut(s) 425, 588
ScrFI CCNGG 3 cut(s) 102, 189, 790
SfaNI GCATC 2 cut(s) 42, 397
SfcI CTRYAG 2 cut(s) 273, 861
SfuI TTCGAA 1 cut(s) 741
SinI GGWCC 3 cut(s) 44, 98, 528
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 347, 941
SmoI CTYRAG 2 cut(s) 347, 941
Sse9I AATT 7 cut(s) 106, 234, 316, 445, 811, 1001, 1011
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 3 cut(s) 801, 822, 983
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 100, 187, 788
StyI CCWWGG 2 cut(s) 47, 1017
TaqI TCGA 6 cut(s) 434, 506, 741, 746, 759, 991
TasI AATT 7 cut(s) 106, 234, 316, 445, 811, 1001, 1011
TatI WGTACW 4 cut(s) 629, 803, 857, 979
TfiI GAWTC 4 cut(s) 192, 355, 743, 818
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 3 cut(s) 123, 136, 562
TseI GCWGC 7 cut(s) 147, 269, 385, 782, 863, 866, 968
TspDTI ATGAA 5 cut(s) 227, 234, 717, 747, 975
TspRI CASTG 3 cut(s) 123, 136, 562
Van91I CCANNNNNTGG 1 cut(s) 686
VpaK11BI GGWCC 3 cut(s) 44, 98, 528
XagI CCTNNNNNAGG 1 cut(s) 793
XspI CTAG 3 cut(s) 801, 822, 983
ZrmI AGTACT 4 cut(s) 631, 805, 859, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.