AT1G70880

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000362
Physical Location & Seq
Reverse (-)
26722846 .. 26723978
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70880.1

Sequence Viewer

Length: 480 bp
ATGGCGGAAGAGGCATCTAGTTTGGTTGGGATCGTTGAGACAACTGTAGAGCTAAAATCTTCGGTGGAGAAGTTCCATGACCTGCTTGTCGGGAGACCACACCATATGTCCAATGCAACTCCATCCAACATTCAGAGCGCTGAGCTTCAAGAAGGCGAGATGGGCCAAGTTGGCGCCGTCATCCTCTGGAATTACGTTCATGATGGGGAGGCAAAGTCGGCGAAACAAAGGATCGAGTCATTGGATCCGGAGAAAAATCGGATCACGTACAGGGTGGTAGAGGGTGATTTATTGAAAGAGTACACGAGTTTCGTGACGACCTTCCAAGTGACACCTAAGGAAGGAGAACCTGGAAGTGTTGCACATTGGCACTTTGAGTATGAGAAAATTAACGAGGAGGTGGCTCACCCTGAAACTCTCCTCCAGTTGGCAACCGAAGTCTCTAAAGATATGGATGAACATCTCTTATCCGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

159

Amino Acids

17.86

Weight (kDa)

4.75

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 8 - 158 8.1e-51 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 12 - 137 8.3e-08 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 173
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 1 cut(s) 5
AclWI GGATC 5 cut(s) 38, 239, 239, 252, 269
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 2 cut(s) 269, 302
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 341, 427
AgsI TTSAA 2 cut(s) 149, 295
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 2 cut(s) 52, 145
AluI AGCT 2 cut(s) 52, 145
Alw26I GTCTC 3 cut(s) 32, 88, 445
AlwI GGATC 5 cut(s) 38, 239, 239, 252, 269
Aor13HI TCCGGA 1 cut(s) 247
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 1 cut(s) 163
AspLEI GCGC 2 cut(s) 140, 176
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 296, 398
AxyI CCTNAGG 1 cut(s) 336
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 173
BauI CACGAG 1 cut(s) 304
BccI CCATC 3 cut(s) 130, 154, 197
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 3 cut(s) 32, 88, 445
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 45
BfoI RGCGCY 2 cut(s) 141, 177
BfuAI ACCTGC 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 171
BlpI GCTNAGC 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 175, 246
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 407
Bpu1102I GCTNAGC 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 427
Bse1I ACTGG 1 cut(s) 424
Bse21I CCTNAGG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 3 cut(s) 122, 180, 460
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 341, 427
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 2 cut(s) 410, 410
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 341, 427
BsmAI GTCTC 3 cut(s) 32, 88, 445
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 88
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 4 cut(s) 30, 231, 244, 261
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 247
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 175, 246
BspMI ACCTGC 1 cut(s) 90
BspPI GGATC 5 cut(s) 38, 239, 239, 252, 269
BspT107I GGYRCC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 4 cut(s) 30, 231, 244, 261
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 304
Bst2BI CACGAG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 141, 336
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 3 cut(s) 122, 180, 460
BstH2I RGCGCY 2 cut(s) 141, 177
BstHHI GCGC 2 cut(s) 140, 176
BstKTI GATC 4 cut(s) 33, 234, 247, 264
BstMAI GTCTC 3 cut(s) 32, 88, 445
BstMBI GATC 4 cut(s) 30, 231, 244, 261
BstMWI GCNNNNNNNGC 4 cut(s) 11, 162, 171, 218
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu36I CCTNAGG 1 cut(s) 336
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 3 cut(s) 122, 180, 460
BveI ACCTGC 1 cut(s) 90
CciI TCATGA 1 cut(s) 199
CfoI GCGC 2 cut(s) 140, 176
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 268, 301
CviAII CATG 2 cut(s) 77, 200
CviJI RGCY 4 cut(s) 52, 145, 165, 404
CviKI_1 RGCY 4 cut(s) 52, 145, 165, 404
CviQI GTAC 2 cut(s) 268, 301
DdeI CTNAG 2 cut(s) 141, 336
DinI GGCGCC 1 cut(s) 175
DpnI GATC 4 cut(s) 32, 233, 246, 263
DpnII GATC 4 cut(s) 30, 231, 244, 261
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 139
Eco81I CCTNAGG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 349
EgeI GGCGCC 1 cut(s) 175
EheI GGCGCC 1 cut(s) 175
FaeI CATG 2 cut(s) 80, 203
FaiI YATR 6 cut(s) 78, 105, 107, 201, 381, 452
FatI CATG 2 cut(s) 76, 199
FauNDI CATATG 1 cut(s) 105
FokI GGATG 3 cut(s) 109, 167, 467
FspBI CTAG 1 cut(s) 18
GlaI GCGC 2 cut(s) 139, 175
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 2 cut(s) 141, 177
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 248
HhaI GCGC 2 cut(s) 140, 176
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 80, 203
Hin6I GCGC 2 cut(s) 138, 174
HinP1I GCGC 2 cut(s) 138, 174
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 248
HphI GGTGA 2 cut(s) 296, 398
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 135, 261, 472
Hpy188III TCNNGA 6 cut(s) 91, 149, 187, 200, 248, 313
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 146, 331, 335
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 195, 266
HpyCH4V TGCA 2 cut(s) 116, 362
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 162, 171, 218
HpyF3I CTNAG 2 cut(s) 141, 336
HpySE526I ACGT 2 cut(s) 195, 266
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 80, 203
HspAI GCGC 2 cut(s) 138, 174
KasI GGCGCC 1 cut(s) 173
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 30, 231, 244, 261
LpnPI CCDG 8 cut(s) 95, 172, 256, 261, 336, 363, 423, 437
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 18
MaeII ACGT 2 cut(s) 195, 266
MaeIII GTNAC 2 cut(s) 313, 328
MalI GATC 4 cut(s) 32, 233, 246, 263
MboI GATC 4 cut(s) 30, 231, 244, 261
MboII GAAGA 2 cut(s) 20, 51
MflI RGATCY 1 cut(s) 244
MluCI AATT 2 cut(s) 190, 387
Mly113I GGCGCC 1 cut(s) 174
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 4, 194, 202, 274, 388, 391, 431, 466
MroI TCCGGA 1 cut(s) 247
MseI TTAA 1 cut(s) 390
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 4 cut(s) 11, 162, 171, 218
NarI GGCGCC 1 cut(s) 174
NdeI CATATG 1 cut(s) 105
NdeII GATC 4 cut(s) 30, 231, 244, 261
NlaIII CATG 2 cut(s) 80, 203
NlaIV GGNNCC 2 cut(s) 175, 246
NmuCI GTSAC 2 cut(s) 313, 328
PagI TCATGA 1 cut(s) 199
PleI GAGTC 1 cut(s) 244
PluTI GGCGCC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 244
Ppu21I YACGTR 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 175, 246
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 269, 302
RsaNI GTAC 2 cut(s) 268, 301
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 4 cut(s) 30, 231, 244, 261
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 351
SetI ASST 9 cut(s) 54, 84, 147, 198, 269, 323, 337, 352, 402
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 45
SfoI GGCGCC 1 cut(s) 175
Sse9I AATT 2 cut(s) 190, 387
SsiI CCGC 1 cut(s) 5
SspDI GGCGCC 1 cut(s) 173
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 198, 269
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 190, 387
TatI WGTACW 1 cut(s) 300
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 2 cut(s) 313, 328
Tsp45I GTSAC 2 cut(s) 313, 328
TspDTI ATGAA 2 cut(s) 188, 471
XagI CCTNNNNNAGG 1 cut(s) 339
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.