Rorug01G0046600

MLP-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
7809299 .. 7809541
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0046600.1

Sequence Viewer

Length: 243 bp
ATGCCTGAATTCACCGCCATATTGACTGCAAAGTCTTTGGGGCTTCAAGAAACTCCAAGTGGTTTAATGGTGCCAGTTGTAGCTACAGAGACAAAGAAGAAAAGGGGGCGTCCTCTTGGAGCCAGAAATAAAAATCCACCAAAGACCAAGAATGACAAGAAACATGCTTCTCCATTGAGTCTCACGGATTCTCCATGGTCCTCTAGCCCTTCGGGTAAGAGCAAGGGGAAAGAGATTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.57

Weight (kDa)

10.14

Isoelectric Point (pI)

76.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 70
AciI CCGC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 8
AcyI GRCGYC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 47
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 83, 185
ApoI RAATTY 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 4
AvaII GGWCC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 83, 185
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 72, 121
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bse1I ACTGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 83, 185
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 72, 121
BspT107I GGYRCC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 194
BssNI GRCGYC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 109
BstDSI CCRYGG 1 cut(s) 194
BstMAI GTCTC 2 cut(s) 83, 185
BstNSI RCATGY 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 198
CseI GACGC 1 cut(s) 98
CviAII CATG 2 cut(s) 164, 195
CviJI RGCY 4 cut(s) 43, 83, 122, 207
CviKI_1 RGCY 4 cut(s) 43, 83, 122, 207
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 2 cut(s) 167, 198
FaiI YATR 3 cut(s) 20, 165, 196
FatI CATG 2 cut(s) 163, 194
FspBI CTAG 1 cut(s) 204
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 2 cut(s) 167, 198
HinfI GANTC 2 cut(s) 178, 188
HphI GGTGA 1 cut(s) 4
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 2 cut(s) 167, 198
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 18, 87, 136
MaeI CTAG 1 cut(s) 204
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 2 cut(s) 123, 211
MseI TTAA 1 cut(s) 65
NcoI CCATGG 1 cut(s) 194
NlaIII CATG 2 cut(s) 167, 198
NlaIV GGNNCC 2 cut(s) 72, 121
NspI RCATGY 1 cut(s) 167
PfeI GAWTC 1 cut(s) 188
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 72, 121
PspPI GGNCC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 1 cut(s) 187
SetI ASST 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 198
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 194
TasI AATT 1 cut(s) 8
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.