MD13G1022700.v1.1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000362
Physical Location & Seq
Reverse (-)
1627661 .. 1629214
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1022700.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGGCACGGGAGGGCACGAGAAGTGGGAGGGTAAACTATCCTTGTCCAAGCTGGAGACCGTTGTTGAAATCAAGGCTTCCGCTGCCAAGTTCCATGAAATGTTCACACACAAACCACACCACATCTCCAATGCCAGCGACAGAATCATTCAGGCCTGTGACCTACATGAAGGTGATTGGGGAACCGTCGGATCTGTGGTCTACTGGAATTATTTCTATGATGGAAAAGCCAAAGTTGCTAAGGACTTGGTTGAAGCCATAGATGCTGAAAATAATCTGATCACTTTCAAAGTGATTGAAGGAGATCTTTTGGAGCATTACAAGAGCTTCAAGTTCACCATCCACGCAACTCCGAAAGGCGAGGGATGCAACGTGCACTGGACTTTGGAGTATGAGAAGCACCACCACGACGATATTGAAGATCCACATACATTGCTCCAGTTATTAGTTGAGCTCTCCAAAGATATTGATGCTCACCTTACAAGCACCGACGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

166

Amino Acids

18.68

Weight (kDa)

5.52

Isoelectric Point (pI)

22.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 17 - 162 1e-50 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 201
AciI CCGC 1 cut(s) 81
AclWI GGATC 2 cut(s) 199, 416
AgsI TTSAA 6 cut(s) 68, 254, 289, 299, 331, 419
AluBI AGCT 3 cut(s) 52, 327, 454
AluI AGCT 3 cut(s) 52, 327, 454
Alw21I GWGCWC 2 cut(s) 378, 456
Alw26I GTCTC 1 cut(s) 50
Alw44I GTGCAC 1 cut(s) 374
AlwI GGATC 2 cut(s) 199, 416
AoxI GGCC 1 cut(s) 153
ApaLI GTGCAC 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 185, 328, 467
BaeGI GKGCMC 3 cut(s) 8, 18, 378
BanII GRGCYC 1 cut(s) 456
BauI CACGAG 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 378, 456
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 215, 347
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 50
BglII AGATCT 1 cut(s) 304
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 3 cut(s) 253, 356, 460
BpmI CTGGAG 2 cut(s) 74, 422
Bpu10I CCTNAGC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bse1I ACTGG 3 cut(s) 209, 383, 439
Bse3DI GCAATG 1 cut(s) 431
BseGI GGATG 2 cut(s) 339, 371
BseMI GCAATG 1 cut(s) 431
BseNI ACTGG 3 cut(s) 209, 383, 439
BseSI GKGCMC 3 cut(s) 8, 18, 378
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 378, 456
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 4 cut(s) 8, 18, 378, 456
Bsp143I GATC 4 cut(s) 191, 279, 304, 421
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 2 cut(s) 199, 416
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 431
BsrI ACTGG 3 cut(s) 209, 383, 439
BssMI GATC 4 cut(s) 191, 279, 304, 421
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 61, 187
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 339, 371
BstKTI GATC 4 cut(s) 194, 282, 307, 424
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 4 cut(s) 191, 279, 304, 421
BstMWI GCNNNNNNNGC 4 cut(s) 83, 236, 263, 366
BstSLI GKGCMC 3 cut(s) 8, 18, 378
BstV1I GCAGC 1 cut(s) 70
BstX2I RGATCY 3 cut(s) 191, 304, 421
BstYI RGATCY 3 cut(s) 191, 304, 421
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 2 cut(s) 339, 371
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 136
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 2 cut(s) 95, 167
CviJI RGCY 7 cut(s) 52, 77, 155, 230, 257, 327, 454
CviKI_1 RGCY 7 cut(s) 52, 77, 155, 230, 257, 327, 454
DdeI CTNAG 1 cut(s) 240
DpnI GATC 4 cut(s) 193, 281, 306, 423
DpnII GATC 4 cut(s) 191, 279, 304, 421
Ecl136II GAGCTC 1 cut(s) 454
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 454
EcoICRI GAGCTC 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 456
FaeI CATG 2 cut(s) 98, 170
FaiI YATR 7 cut(s) 96, 168, 219, 260, 393, 429, 496
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 2 cut(s) 94, 166
FbaI TGATCA 1 cut(s) 279
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 326, 378
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 2 cut(s) 74, 422
HaeIII GGCC 1 cut(s) 155
Hin1II CATG 2 cut(s) 98, 170
HinfI GANTC 1 cut(s) 144
HphI GGTGA 3 cut(s) 185, 328, 467
Hpy166II GTNNAC 5 cut(s) 35, 105, 202, 336, 376
Hpy188I TCNGA 3 cut(s) 191, 279, 354
Hpy8I GTNNAC 5 cut(s) 35, 105, 202, 336, 376
Hpy99I CGWCG 3 cut(s) 191, 413, 494
HpyAV CCTTC 2 cut(s) 164, 293
HpyCH4III ACNGT 2 cut(s) 61, 187
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 2 cut(s) 369, 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 236, 263, 366
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 2 cut(s) 98, 170
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 4 cut(s) 191, 279, 304, 421
LmnI GCTCC 2 cut(s) 313, 441
LpnPI CCDG 7 cut(s) 38, 137, 148, 169, 190, 364, 452
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 3 cut(s) 253, 356, 460
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 158
MalI GATC 4 cut(s) 193, 281, 306, 423
MboI GATC 4 cut(s) 191, 279, 304, 421
MboII GAAGA 1 cut(s) 431
MflI RGATCY 3 cut(s) 191, 304, 421
MhlI GDGCHC 4 cut(s) 8, 18, 378, 456
MluCI AATT 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 3 cut(s) 5, 22, 355
MroXI GAANNNNTTC 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 83, 236, 263, 366
NdeII GATC 4 cut(s) 191, 279, 304, 421
NlaIII CATG 2 cut(s) 98, 170
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 158
PceI AGGCCT 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 184
PsuI RGATCY 3 cut(s) 191, 304, 421
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 456
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 4 cut(s) 191, 279, 304, 421
SduI GDGCHC 4 cut(s) 8, 18, 378, 456
SetI ASST 7 cut(s) 54, 165, 175, 329, 375, 456, 480
SfaNI GCATC 3 cut(s) 253, 356, 460
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 208
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 1 cut(s) 81
SstI GAGCTC 1 cut(s) 456
StuI AGGCCT 1 cut(s) 155
TaaI ACNGT 2 cut(s) 61, 187
TaiI ACGT 1 cut(s) 375
TasI AATT 1 cut(s) 208
TfiI GAWTC 1 cut(s) 144
TscAI CASTG 1 cut(s) 383
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 111, 183
TspRI CASTG 1 cut(s) 383
VneI GTGCAC 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.