Prupe.1G328500_v2.0.a1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000362
Physical Location & Seq
Forward (+)
31209534 .. 31211114
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G328500.1

Sequence Viewer

Length: 474 bp
ATGGCTCAAATAGCAAACATAGAAGTCCAAGCCGAGATCAAAGCCAGTGCTGACAAGTTCTACGAAATCTTTCGTAGCAAAGGGTACCTTTTGCCCAAGATCTGCCCTAATATTATAAAGGATCTACAGGTGCTTAAAGGTGACGGCAGCTCTGTGGGCTCAATCAAGCAATGGACTTACGTTGCTGCAGGAAATTTTTCTGAGGTTTCGAAAGAGACAATTGAATCCATAGATGAGAAAAACAAATCAATCGCCTTCCGAACGGTGGAAGGAGAGGTCACGAAACACTACAAGAGTTTCAAGGCGACAGTTGAAGTTACACCAAGGGGTAATGGATGCAGCAGCAGCTCATCAGTGAAATGGAACATAGAATACGAGAAGCAGAATGAGGCTGTTCCGGCTCCTAATAAGTATCTGGACTTTGTGGTCATTCTCACTAACAATGTTGATGCCTACCTTCTCAATAATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

158

Amino Acids

17.43

Weight (kDa)

6.6

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 116
AasI GACNNNNNNGTC 1 cut(s) 425
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 193
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 3 cut(s) 224, 301, 314
AluBI AGCT 2 cut(s) 150, 348
AluI AGCT 2 cut(s) 150, 348
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 129
ApeKI GCWGC 5 cut(s) 147, 185, 339, 342, 345
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 2 cut(s) 69, 196
Asp718I GGTACC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 161
BbvI GCAGC 5 cut(s) 159, 172, 351, 354, 357
BceAI ACGGC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 209
BfmI CTRYAG 2 cut(s) 125, 186
BglII AGATCT 1 cut(s) 99
BisI GCNGC 5 cut(s) 148, 186, 340, 343, 346
BlsI GCNGC 5 cut(s) 149, 187, 341, 344, 347
BmiI GGNNCC 2 cut(s) 86, 402
BmsI GCATC 2 cut(s) 326, 439
Bpu14I TTCGAA 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 159, 172, 351, 354, 357
BshNI GGYRCC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 3 cut(s) 36, 99, 121
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 86, 402
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 3 cut(s) 36, 99, 121
BssT1I CCWWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 265, 310
BstBI TTCGAA 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 341
BstKTI GATC 3 cut(s) 39, 102, 124
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 3 cut(s) 36, 99, 121
BstMWI GCNNNNNNNGC 4 cut(s) 11, 156, 345, 398
BstSFI CTRYAG 2 cut(s) 125, 186
BstV1I GCAGC 5 cut(s) 159, 172, 351, 354, 357
BstX2I RGATCY 2 cut(s) 99, 121
BstYI RGATCY 2 cut(s) 99, 121
BtsCI GGATG 1 cut(s) 341
BtsIMutI CAGTG 2 cut(s) 52, 360
Csp6I GTAC 1 cut(s) 85
CviJI RGCY 8 cut(s) 5, 32, 44, 150, 159, 348, 392, 401
CviKI_1 RGCY 8 cut(s) 5, 32, 44, 150, 159, 348, 392, 401
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 201
DpnI GATC 3 cut(s) 38, 101, 123
DpnII GATC 3 cut(s) 36, 99, 121
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 323
FaiI YATR 4 cut(s) 20, 116, 230, 368
FalI AAGNNNNNCTT 2 cut(s) 72, 104
Fnu4HI GCNGC 5 cut(s) 148, 186, 340, 343, 346
FokI GGATG 1 cut(s) 348
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 5 cut(s) 148, 186, 340, 343, 346
GluI GCNGC 5 cut(s) 148, 186, 340, 343, 346
HapII CCGG 1 cut(s) 398
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 202, 260
Hpy188III TCNNGA 2 cut(s) 280, 416
HpyAV CCTTC 3 cut(s) 263, 265, 467
HpyCH4III ACNGT 2 cut(s) 265, 310
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 188, 339
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 156, 345, 398
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 180
KpnI GGTACC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 36, 99, 121
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 5 cut(s) 58, 113, 174, 401, 411
Lsp1109I GCAGC 5 cut(s) 159, 172, 351, 354, 357
LweI GCATC 2 cut(s) 326, 439
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 140, 277, 316
MalI GATC 3 cut(s) 38, 101, 123
MboI GATC 3 cut(s) 36, 99, 121
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 2 cut(s) 99, 121
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 193, 219
MnlI CCTC 3 cut(s) 196, 268, 382
MroXI GAANNNNTTC 2 cut(s) 69, 196
MseI TTAA 1 cut(s) 135
MspI CCGG 1 cut(s) 398
MunI CAATTG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 11, 156, 345, 398
NdeII GATC 3 cut(s) 36, 99, 121
NlaIV GGNNCC 2 cut(s) 86, 402
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 2 cut(s) 140, 277
NspV TTCGAA 1 cut(s) 209
PdmI GAANNNNTTC 2 cut(s) 69, 196
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 5 cut(s) 149, 187, 341, 344, 347
PsiI TTATAA 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 86, 402
PsrI GAACNNNNNNTAC 2 cut(s) 356, 388
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 2 cut(s) 99, 121
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 5 cut(s) 148, 186, 340, 343, 346
Sau3AI GATC 3 cut(s) 36, 99, 121
SduI GDGCHC 1 cut(s) 161
SetI ASST 9 cut(s) 90, 132, 142, 152, 183, 207, 279, 350, 459
SfaNI GCATC 2 cut(s) 326, 439
SfcI CTRYAG 2 cut(s) 125, 186
SfuI TTCGAA 1 cut(s) 209
Sse9I AATT 2 cut(s) 193, 219
SspI AATATT 1 cut(s) 112
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 265, 310
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 209
TasI AATT 2 cut(s) 193, 219
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 52, 360
TseFI GTSAC 2 cut(s) 140, 277
TseI GCWGC 5 cut(s) 147, 185, 339, 342, 345
Tsp45I GTSAC 2 cut(s) 140, 277
TspRI CASTG 2 cut(s) 52, 360
XapI RAATTY 1 cut(s) 193
XmnI GAANNNNTTC 2 cut(s) 69, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.