FvH4_4g32770

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000362
Physical Location & Seq
Forward (+)
31287010 .. 31288026
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32770.t1

Sequence Viewer

Length: 450 bp
ATGTATTATGGAAAGGTGGAGACAGATGTTGAACTCAAGACATCTGCTGCCAAGTTCCACGAGTTCTTCACCAAAAGACCACACCATCTGAGCAACATCAGCTCAGACAAAATTAAGGACTGCAATCTTCATGAAGGCGAATGGGGAACGGTGGGTTCTATCGTCCACTGGAACTATGTCCATGATGGCAAAGCTAAAGTTGCCAAGGAGTTGTTTGAGGCCATAGATGACGAGAAGAACTCGATCACTCTGAAAGTGGTGGAAGGAGACCTTCTGGAGCATTACAAGAGCTTCAAGATCACCATTCAAGCCTCTCCAAAAGGTCAGGGATGCACTGTGCATTGGACATTTGAATATGAGAAAGTGCACGGCGATGTTGAAGACCCTCATACTTTGCTCCAGCTCGCTGCTGATCTCTCCAAAGACATCTGTTCTCACCTAAGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

5.84

Isoelectric Point (pI)

16.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 148 9.8e-53 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 5 - 128 1.2e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 5 cut(s) 32, 295, 308, 353, 380
AluBI AGCT 4 cut(s) 102, 194, 291, 403
AluI AGCT 4 cut(s) 102, 194, 291, 403
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 2 cut(s) 14, 261
Alw44I GTGCAC 1 cut(s) 365
AoxI GGCC 1 cut(s) 219
ApaLI GTGCAC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 47, 407
AsuHPI GGTGA 3 cut(s) 61, 292, 428
BaeGI GKGCMC 1 cut(s) 369
BauI CACGAG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 34, 394
BccI CCATC 2 cut(s) 93, 179
BceAI ACGGC 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 14, 261
BisI GCNGC 2 cut(s) 48, 408
BlsI GCNGC 2 cut(s) 49, 409
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 2 cut(s) 296, 383
Bpu10I CCTNAGC 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 335
BseMII CTCAG 2 cut(s) 80, 117
BseNI ACTGG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 2 cut(s) 34, 394
BshFI GGCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 369
BsmAI GTCTC 2 cut(s) 14, 261
BsnI GGCC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 243, 297, 412
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 81, 116
BspHI TCATGA 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 243, 297, 412
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 151, 337
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 3 cut(s) 89, 103, 440
BstF5I GGATG 1 cut(s) 335
BstKTI GATC 3 cut(s) 246, 300, 415
BstMAI GTCTC 2 cut(s) 14, 261
BstMBI GATC 3 cut(s) 243, 297, 412
BstMWI GCNNNNNNNGC 2 cut(s) 99, 200
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 34, 394
BstV2I GAAGAC 1 cut(s) 387
BsuRI GGCC 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 1 cut(s) 335
BtsIMutI CAGTG 2 cut(s) 166, 333
Cac8I GCNNGC 1 cut(s) 405
CciI TCATGA 1 cut(s) 130
CviAII CATG 2 cut(s) 131, 182
CviJI RGCY 6 cut(s) 102, 194, 221, 291, 311, 403
CviKI_1 RGCY 6 cut(s) 102, 194, 221, 291, 311, 403
DdeI CTNAG 3 cut(s) 89, 103, 440
DpnI GATC 3 cut(s) 245, 299, 414
DpnII GATC 3 cut(s) 243, 297, 412
Eco130I CCWWGG 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 134, 185
FaiI YATR 7 cut(s) 9, 132, 177, 183, 224, 357, 390
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 2 cut(s) 130, 181
Fnu4HI GCNGC 2 cut(s) 48, 408
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 48, 408
GluI GCNGC 2 cut(s) 48, 408
GsuI CTGGAG 2 cut(s) 296, 383
HaeIII GGCC 1 cut(s) 221
Hin1II CATG 2 cut(s) 134, 185
HphI GGTGA 3 cut(s) 61, 292, 428
Hpy166II GTNNAC 2 cut(s) 166, 367
Hpy188I TCNGA 3 cut(s) 90, 106, 252
Hpy188III TCNNGA 4 cut(s) 37, 131, 275, 295
Hpy8I GTNNAC 2 cut(s) 166, 367
HpyAV CCTTC 3 cut(s) 128, 257, 281
HpyCH4III ACNGT 2 cut(s) 151, 337
HpyCH4V TGCA 4 cut(s) 123, 333, 340, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 200
HpyF3I CTNAG 3 cut(s) 89, 103, 440
Hsp92II CATG 2 cut(s) 134, 185
Kzo9I GATC 3 cut(s) 243, 297, 412
LmnI GCTCC 2 cut(s) 277, 402
LpnPI CCDG 4 cut(s) 154, 260, 311, 413
Lsp1109I GCAGC 2 cut(s) 34, 394
LweI GCATC 1 cut(s) 320
MalI GATC 3 cut(s) 245, 299, 414
MboI GATC 3 cut(s) 243, 297, 412
MboII GAAGA 4 cut(s) 58, 119, 247, 392
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 1 cut(s) 111
MnlI CCTC 3 cut(s) 211, 322, 396
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 99, 200
NdeII GATC 3 cut(s) 243, 297, 412
NlaIII CATG 2 cut(s) 134, 185
PagI TCATGA 1 cut(s) 130
PkrI GCNGC 2 cut(s) 49, 409
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 48, 408
Sau3AI GATC 3 cut(s) 243, 297, 412
SduI GDGCHC 1 cut(s) 369
SetI ASST 9 cut(s) 18, 104, 196, 273, 293, 325, 405, 441, 449
SfaNI GCATC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 111
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 151, 337
TaqI TCGA 1 cut(s) 242
TasI AATT 1 cut(s) 111
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 173, 340
TseI GCWGC 2 cut(s) 47, 407
TspDTI ATGAA 2 cut(s) 119, 147
TspRI CASTG 2 cut(s) 173, 340
VneI GTGCAC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.