Prupe.1G329000_v2.0.a1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000362
Physical Location & Seq
Forward (+)
31263175 .. 31264260
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G329000.1

Sequence Viewer

Length: 471 bp
ATGTCTAGCAATCATGGTAAGGTAGAGACTGATGTTGAAATCAAGGCTCCTGCTACCAAGATCCATGAAGTGTTGACACACAGACCACACCACATATCCAATATCAGCCCTAACAACATTCAGGGTTGTGATTTACTTGAAGGTGAATGGGGCACCGTCGGCTCTGTGGTCTACTGGAATTATTTCCATGATGGGAAAGCTAAAGTTTCCAAGCAGTTGATTGAAGCCATAGACGCTGAAAAGAATCTGATCACTTTCAAAGTGATCGAAGGAGATCTGCTGGAGCATTACAAGAGCTTCAAGATGACCTTTCATGCCACTCCAAAAGCTCATGGTCAGGGCAGCATCGTCCATTGGACTATGGAGTATGAGAAGCATCATGGTGATATTGAGGACCCACATACCTTGCTCCAGTTTGCAGTTGATGTCTCCAAAGATGTCGATGCTCATCTTACAAGTGCCCAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

157

Amino Acids

17.52

Weight (kDa)

5.91

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 171
AclWI GGATC 1 cut(s) 55
AgsI TTSAA 5 cut(s) 38, 140, 224, 259, 301
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 3 cut(s) 200, 297, 329
AluI AGCT 3 cut(s) 200, 297, 329
Alw26I GTCTC 2 cut(s) 20, 433
AlwI GGATC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 155, 395
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 2 cut(s) 155, 463
BanI GGYRCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 464
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 20, 433
BfaI CTAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 274
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 464
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 3 cut(s) 48, 154, 396
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 3 cut(s) 354, 385, 433
BpmI CTGGAG 2 cut(s) 302, 395
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 462
Bse1I ACTGG 2 cut(s) 179, 412
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 447
BseNI ACTGG 2 cut(s) 179, 412
BseSI GKGCMC 2 cut(s) 155, 463
BseXI GCAGC 1 cut(s) 354
BshNI GGYRCC 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 20, 433
Bsp1286I GDGCHC 2 cut(s) 155, 463
Bsp143I GATC 4 cut(s) 60, 249, 264, 274
BspLI GGNNCC 3 cut(s) 48, 154, 396
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 2 cut(s) 179, 412
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 4 cut(s) 60, 249, 264, 274
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 1 cut(s) 157
BstKTI GATC 4 cut(s) 63, 252, 267, 277
BstMAI GTCTC 2 cut(s) 20, 433
BstMBI GATC 4 cut(s) 60, 249, 264, 274
BstMWI GCNNNNNNNGC 2 cut(s) 159, 233
BstNI CCWGG 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 2 cut(s) 155, 463
BstV1I GCAGC 1 cut(s) 354
BstX2I RGATCY 2 cut(s) 60, 274
BstYI RGATCY 2 cut(s) 60, 274
Cfr13I GGNCC 1 cut(s) 394
CseI GACGC 1 cut(s) 242
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 6 cut(s) 14, 65, 188, 314, 332, 380
CviJI RGCY 7 cut(s) 47, 108, 162, 200, 227, 297, 329
CviKI_1 RGCY 7 cut(s) 47, 108, 162, 200, 227, 297, 329
DpnI GATC 4 cut(s) 62, 251, 266, 276
DpnII GATC 4 cut(s) 60, 249, 264, 274
Eco47I GGWCC 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 462
FaeI CATG 6 cut(s) 17, 68, 191, 317, 335, 383
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 6 cut(s) 13, 64, 187, 313, 331, 379
FbaI TGATCA 1 cut(s) 249
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 343
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 343
GsuI CTGGAG 2 cut(s) 302, 395
HgaI GACGC 1 cut(s) 242
Hin1II CATG 6 cut(s) 17, 68, 191, 317, 335, 383
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 1 cut(s) 244
HphI GGTGA 2 cut(s) 155, 395
Hpy166II GTNNAC 2 cut(s) 75, 172
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 2 cut(s) 75, 172
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 134, 263
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 233
Hsp92II CATG 6 cut(s) 17, 68, 191, 317, 335, 383
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 4 cut(s) 60, 249, 264, 274
LmnI GCTCC 3 cut(s) 52, 283, 414
LpnPI CCDG 7 cut(s) 63, 107, 160, 266, 323, 425, 449
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 3 cut(s) 354, 385, 433
MaeI CTAG 1 cut(s) 6
MalI GATC 4 cut(s) 62, 251, 266, 276
MboI GATC 4 cut(s) 60, 249, 264, 274
MflI RGATCY 2 cut(s) 60, 274
MhlI GDGCHC 2 cut(s) 155, 463
MluCI AATT 1 cut(s) 178
MnlI CCTC 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 381
MspR9I CCNGG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 159, 233
NdeII GATC 4 cut(s) 60, 249, 264, 274
NlaIII CATG 6 cut(s) 17, 68, 191, 317, 335, 383
NlaIV GGNNCC 3 cut(s) 48, 154, 396
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 344
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 462
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 3 cut(s) 48, 154, 396
PspPI GGNCC 1 cut(s) 394
PspPPI RGGWCCY 1 cut(s) 394
PsuI RGATCY 2 cut(s) 60, 274
RseI CAYNNNNRTG 1 cut(s) 381
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 4 cut(s) 60, 249, 264, 274
Sau96I GGNCC 1 cut(s) 394
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 2 cut(s) 155, 463
SetI ASST 7 cut(s) 24, 145, 202, 299, 311, 331, 407
SfaNI GCATC 3 cut(s) 354, 385, 433
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 267, 441
TasI AATT 1 cut(s) 178
TfiI GAWTC 1 cut(s) 244
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 81, 302
VpaK11BI GGWCC 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.