Rh1BG052500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000362
Physical Location & Seq
Reverse (-)
7354398 .. 7354939
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG052500.1

Sequence Viewer

Length: 459 bp
ATGGCTTTGACCGGTAAGATAGAGACGGATGTAGAAATCAAGGCTTCTGCTGCACAGTTCCACGAAATGTTCACCCACAAACCACACCACATTTCCAATATCAGCTCCAACCACATTCAAGGCGTTGACTTACATGAAGGTGACTGGGGAACAGTCGGTGCTATCGTCTACTGGAATTACTTCCATGATGGGAAAGCTAGAGTTGCCAAGGAAAGAATTGAGGCCATAGACGCGGAAAAAAACTTGGTGACTTTCAGAGTAATTGAGGGAGACCTTATGGAGCATTACAAGAGCTTCTTGTTCACCATTCAAGCCACTCCGAAAGGCGAGGGCTGCTCCGTGCACTGGACTCTGGAATATGAGAAGCATCACGGTGATATTACCGACCCACATACGCTGCTCCAGATTGCAGTCGAGGTTTCCAACGACATCGATGCTCACCTTACTGCCCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

152

Amino Acids

17.11

Weight (kDa)

5.52

Isoelectric Point (pI)

24.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 150 1.9e-55 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 6 - 125 3.8e-07 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AccII CGCG 1 cut(s) 233
AciI CCGC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 345
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 2 cut(s) 119, 311
AluBI AGCT 3 cut(s) 105, 197, 294
AluI AGCT 3 cut(s) 105, 197, 294
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 17, 264
Alw44I GTGCAC 1 cut(s) 341
AoxI GGCC 1 cut(s) 222
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 50, 333, 397
AsiGI ACCGGT 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 179
AsuHPI GGTGA 6 cut(s) 64, 152, 259, 295, 386, 431
BaeGI GKGCMC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 37, 320, 384
BccI CCATC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BcoDI GTCTC 2 cut(s) 17, 264
BfaI CTAG 1 cut(s) 198
BisI GCNGC 3 cut(s) 51, 334, 398
BlsI GCNGC 3 cut(s) 52, 335, 399
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 376, 424
BmuI ACTGGG 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpmI CTGGAG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 3 cut(s) 149, 176, 350
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 345
BseNI ACTGG 3 cut(s) 149, 176, 350
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 3 cut(s) 37, 320, 384
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 17, 264
BsmBI CGTCTC 1 cut(s) 17
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 345
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 224
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 3 cut(s) 149, 176, 350
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 57, 154, 374
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 233
BstMAI GTCTC 2 cut(s) 17, 264
BstMWI GCNNNNNNNGC 4 cut(s) 50, 203, 230, 333
BstSLI GKGCMC 1 cut(s) 345
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 37, 320, 384
Bsu15I ATCGAT 1 cut(s) 432
BsuRI GGCC 1 cut(s) 224
BsuTUI ATCGAT 1 cut(s) 432
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 432
CseI GACGC 1 cut(s) 239
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 2 cut(s) 134, 185
CviJI RGCY 8 cut(s) 5, 44, 105, 197, 224, 294, 314, 333
CviKI_1 RGCY 8 cut(s) 5, 44, 105, 197, 224, 294, 314, 333
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 2 cut(s) 137, 188
FaiI YATR 7 cut(s) 135, 186, 227, 278, 360, 393, 457
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 2 cut(s) 133, 184
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 51, 334, 398
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 51, 334, 398
FspBI CTAG 1 cut(s) 198
GluI GCNGC 3 cut(s) 51, 334, 398
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 137, 188
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 12
HphI GGTGA 6 cut(s) 64, 152, 259, 295, 386, 431
Hpy166II GTNNAC 5 cut(s) 72, 127, 169, 303, 343
Hpy188I TCNGA 2 cut(s) 257, 321
Hpy188III TCNNGA 2 cut(s) 353, 403
Hpy8I GTNNAC 5 cut(s) 72, 127, 169, 303, 343
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 57, 154, 374
HpyCH4V TGCA 3 cut(s) 53, 343, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 203, 230, 333
Hsp92II CATG 2 cut(s) 137, 188
LmnI GCTCC 4 cut(s) 110, 280, 341, 405
LpnPI CCDG 6 cut(s) 25, 130, 157, 331, 338, 416
Lsp1109I GCAGC 3 cut(s) 37, 320, 384
LweI GCATC 2 cut(s) 376, 424
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 140, 247
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 175, 216, 261
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 132, 447
MnlI CCTC 4 cut(s) 214, 259, 322, 409
MroXI GAANNNNTTC 1 cut(s) 179
MslI CAYNNNNRTG 2 cut(s) 138, 372
MspI CCGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 4 cut(s) 50, 203, 230, 333
NlaIII CATG 2 cut(s) 137, 188
NmuCI GTSAC 2 cut(s) 140, 247
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 3 cut(s) 52, 335, 399
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 138, 372
SatI GCNGC 3 cut(s) 51, 334, 398
SchI GAGTC 1 cut(s) 343
SduI GDGCHC 1 cut(s) 345
SetI ASST 7 cut(s) 107, 142, 199, 276, 296, 420, 444
SfaNI GCATC 2 cut(s) 376, 424
SmiMI CAYNNNNRTG 2 cut(s) 138, 372
Sse9I AATT 3 cut(s) 175, 216, 261
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 57, 154, 374
TaqI TCGA 2 cut(s) 414, 432
TasI AATT 3 cut(s) 175, 216, 261
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 2 cut(s) 140, 247
TseI GCWGC 3 cut(s) 50, 333, 397
Tsp45I GTSAC 2 cut(s) 140, 247
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 2 cut(s) 41, 328
TspRI CASTG 1 cut(s) 350
VneI GTGCAC 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.