Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

8757864 .. 8759645

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24735.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGAAACTGCTTCCGCCCTCTAAATTGCTTCCGCCTAAAGGGATTCTCAAGAGCGACGCTCTCAAAAAGTACATCTTTGAAACGACGGCGTATCCAAGAGAGCATGAACAACTCAAGAAATTACGAGAAGCTACGGTCCTCAAGTATGGCAATTTAAGCGAGATGGAGGTACCGGTTGATGAGGGGCATTTCCTATCTATGCTTCTAAAGATAATGAATGCCAAAAAGACGATAGAGCTTGGTGTTTTCACCGGTTATTCGTTGCTCACCACGGCCCTAGCATTGCCTCATGATGGACATGTTACTGGAATAGATATTGATAAAGAAGCTTACGAGATGGGACTGGAGTTCATAAAGAATGCAGGTGTTCATCACAAGATCAATTTCATCCACTCTGATTGTCTTCAGGCCTTAGACAATATGTTGAGTGAGAATCCAAAACCAGAGTTTGATTTCGCATTTGTTGACGCTGATAAACCAAACTATGCAAACATGCACGAGAGGCTAATGAAGCTGGTGAAGGTAGGAGGAGTCATAGCGTTTGATAACACATTGTGGTCAGGGTTTGTGGCGGAGAAAGAGGAAAACGTGCCAGTGCACATGAGGGTAAACAGAAAAGCCTTTTTGGACTTGAACAAGCGTCTCGCTGCTGATCCTCACGTCGAGGTCTCTCAAGTCTCCATTGGCGATGGTGTCACTCTCTGCAGACGCCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010154 GO:0016740 GO:0016741 GO:0019438 GO:0019748 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0042409 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0080012 GO:0080076 GO:0080077 GO:0080078 GO:0080088 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko00950 ko01100 ko01110 map00360 map00940 map00941 map00945 map00950 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

240

Amino Acids

27.03

Weight (kDa)

6.37

Isoelectric Point (pI)

26.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	8 - 194	2.9e-81	O-methyltransferase
Methyltransf_24	PF13578	34 - 140	1.8e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	356
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	3 cut(s)	17, 35, 575
AclWI	GGATC	1 cut(s)	650
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	712
AdeI	CACNNNGTG	1 cut(s)	558
AfaI	GTAC	2 cut(s)	74, 174
AfiI	CCNNNNNNNGG	2 cut(s)	41, 296
AflIII	ACRYGT	1 cut(s)	301
AgeI	ACCGGT	2 cut(s)	175, 254
AgsI	TTSAA	2 cut(s)	83, 637
AjiI	CACGTC	1 cut(s)	664
AluBI	AGCT	4 cut(s)	134, 241, 332, 517
AluI	AGCT	4 cut(s)	134, 241, 332, 517
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	3 cut(s)	650, 676, 685
Alw44I	GTGCAC	1 cut(s)	599
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	2 cut(s)	276, 411
ApaLI	GTGCAC	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	650
AsiGI	ACCGGT	2 cut(s)	175, 254
Asp718I	GGTACC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	139, 277
AsuHPI	GGTGA	3 cut(s)	244, 262, 532
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	4 cut(s)	160, 290, 334, 686
BceAI	ACGGC	2 cut(s)	105, 291
BciVI	GTATCC	1 cut(s)	105
BcoDI	GTCTC	3 cut(s)	650, 676, 685
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	651
BlsI	GCNGC	1 cut(s)	652
Bme18I	GGWCC	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	139, 277
BmiI	GGNNCC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	368
BpuEI	CTTGAG	4 cut(s)	35, 101, 128, 660
BsaHI	GRCGYC	1 cut(s)	712
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	2 cut(s)	175, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 296
Bse118I	RCCGGY	2 cut(s)	175, 254
Bse1I	ACTGG	3 cut(s)	313, 351, 596
Bse3DI	GCAATG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	41, 296
BseMI	GCAATG	1 cut(s)	284
BseNI	ACTGG	3 cut(s)	313, 351, 596
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	1 cut(s)	637
BshFI	GGCC	2 cut(s)	278, 413
BshNI	GGYRCC	1 cut(s)	172
BshTI	ACCGGT	2 cut(s)	175, 254
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	2 cut(s)	176, 255
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	41, 296
BsmAI	GTCTC	3 cut(s)	650, 676, 685
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	2 cut(s)	226, 367
BsnI	GGCC	2 cut(s)	278, 413
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	381, 655
BspACI	CCGC	3 cut(s)	17, 35, 575
BspANI	GGCC	2 cut(s)	278, 413
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	710
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	2 cut(s)	175, 254
BsrI	ACTGG	3 cut(s)	313, 351, 596
BssAI	RCCGGY	2 cut(s)	175, 254
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	381, 655
BssNI	GRCGYC	1 cut(s)	712
BssSI	CACGAG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	712
BstDEI	CTNAG	1 cut(s)	415
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	2 cut(s)	384, 658
BstMAI	GTCTC	3 cut(s)	650, 676, 685
BstMBI	GATC	2 cut(s)	381, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 505, 514
BstNSI	RCATGY	2 cut(s)	305, 499
BstSFI	CTRYAG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	637
BstV2I	GAAGAC	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	278, 413
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	705
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	603
BveI	ACCTGC	1 cut(s)	356
CciI	TCATGA	1 cut(s)	292
Cfr10I	RCCGGY	2 cut(s)	175, 254
Cfr13I	GGNCC	2 cut(s)	139, 277
CseI	GACGC	3 cut(s)	68, 479, 632
Csp6I	GTAC	2 cut(s)	73, 173
CspAI	ACCGGT	2 cut(s)	175, 254
CspCI	CAANNNNNGTGG	2 cut(s)	383, 418
CviAII	CATG	5 cut(s)	107, 293, 302, 496, 604
CviJI	RGCY	8 cut(s)	134, 241, 278, 332, 413, 508, 517, 623
CviKI_1	RGCY	8 cut(s)	134, 241, 278, 332, 413, 508, 517, 623
CviQI	GTAC	2 cut(s)	73, 173
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	2 cut(s)	383, 657
DpnII	GATC	2 cut(s)	381, 655
DraIII	CACNNNGTG	1 cut(s)	558
EciI	GGCGGA	3 cut(s)	6, 24, 590
Eco147I	AGGCCT	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	5 cut(s)	110, 296, 305, 499, 607
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	106, 292, 301, 495, 603
Fnu4HI	GCNGC	1 cut(s)	651
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	651
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	278, 413
HapII	CCGG	2 cut(s)	176, 255
HgaI	GACGC	3 cut(s)	68, 479, 632
Hin1I	GRCGYC	1 cut(s)	712
Hin1II	CATG	5 cut(s)	110, 296, 305, 499, 607
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	3 cut(s)	46, 436, 534
HpaII	CCGG	2 cut(s)	176, 255
HphI	GGTGA	3 cut(s)	244, 262, 532
Hpy166II	GTNNAC	3 cut(s)	469, 601, 613
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	3 cut(s)	52, 118, 293
Hpy8I	GTNNAC	3 cut(s)	469, 601, 613
Hpy99I	CGWCG	3 cut(s)	62, 91, 668
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	591, 663
HpyCH4V	TGCA	5 cut(s)	365, 491, 499, 601, 708
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 505, 514
HpyF3I	CTNAG	1 cut(s)	415
HpySE526I	ACGT	2 cut(s)	591, 663
Hsp92I	GRCGYC	1 cut(s)	712
Hsp92II	CATG	5 cut(s)	110, 296, 305, 499, 607
KpnI	GGTACC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	381, 655
Lsp1109I	GCAGC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	2 cut(s)	591, 663
MaeIII	GTNAC	2 cut(s)	304, 697
MalI	GATC	2 cut(s)	383, 657
MboI	GATC	2 cut(s)	381, 655
MboII	GAAGA	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	4 cut(s)	26, 122, 154, 385
MlyI	GAGTC	1 cut(s)	543
MseI	TTAA	1 cut(s)	158
MspI	CCGG	2 cut(s)	176, 255
Mva1269I	GAATGC	2 cut(s)	226, 367
MwoI	GCNNNNNNNGC	3 cut(s)	159, 505, 514
NdeII	GATC	2 cut(s)	381, 655
NlaIII	CATG	5 cut(s)	110, 296, 305, 499, 607
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	697
NspI	RCATGY	2 cut(s)	305, 499
PagI	TCATGA	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	413
PciI	ACATGT	1 cut(s)	301
PctI	GAATGC	2 cut(s)	226, 367
PfeI	GAWTC	2 cut(s)	46, 436
PinAI	ACCGGT	2 cut(s)	175, 254
PkrI	GCNGC	1 cut(s)	652
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
PscI	ACATGT	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	139, 277
PstI	CTGCAG	1 cut(s)	710
RsaI	GTAC	2 cut(s)	74, 174
RsaNI	GTAC	2 cut(s)	73, 173
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	651
Sau3AI	GATC	2 cut(s)	381, 655
Sau96I	GGNCC	2 cut(s)	139, 277
SchI	GAGTC	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	603
SfcI	CTRYAG	1 cut(s)	706
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	4 cut(s)	50, 116, 143, 675
SmoI	CTYRAG	4 cut(s)	50, 116, 143, 675
Sse9I	AATT	4 cut(s)	26, 122, 154, 385
SseBI	AGGCCT	1 cut(s)	413
SsiI	CCGC	3 cut(s)	17, 35, 575
SspMI	CTAG	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	594, 666
TaqI	TCGA	1 cut(s)	666
TasI	AATT	4 cut(s)	26, 122, 154, 385
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	46, 436
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	6 cut(s)	123, 233, 343, 362, 379, 527
TspRI	CASTG	1 cut(s)	603
VneI	GTGCAC	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	139
XceI	RCATGY	2 cut(s)	305, 499
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.