Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

12305662 .. 12307120

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCAGCAGCTACGAAAGAAGAGAAGTTCGATCATCTGGTCTTAGAAAACAAGAACTTGCTCCGAAGCCATGCCCTTCTCAAGTACATCCTGGAAACCAACTGCTACCCGAGAGAACACGAGCAATTGAAGCAACTTAGGGAAGCCACGGTCAAGAAATATGAGCAGCAGTATATTATGAGTGTGCCTGTTGATGAAGGTCTGCTTATCTCCATGCTTCTGAAGATCATGAATGAGAAGAAGACATTGGAGTTAGGGGTATTCACTGGTTATTCTCTTCTCACTACTGCTCTTGCACTTCCTGCTGATGGCAAAATAATAGCAATCGATCAGGATAAAGAAGCATACGAGGTTGGATTGCCGTTCATCAGAAAGGCCGGGGTGGAGCATAAGATTGACTTCTATCAATCAAATGCCTTGTTATTCCTAAGTGATCTCATTAACCGTGGAAAGGAAGAAGGCAGCTTTGATTTTGCGTTTGTGGATGCTGATAAGAACAACTACGTCAAATATCATGAGCTGCTAATGAAGCTTGTCAAGGTTGGAGGAATAATAGCTTATGACAACACACTGTGGTTTGGCTCAGTAGCAGAACCTGAGGAGGAGGTGGCTGAATGCTTCAGGGAATTCAGCCATCATATGAAGAAACTGAACAGCTTCCTAGCCGCAGATCCCCGTATTGAATCAGTTCTTCTTTCCGCCGGAGATGGACTCACCCTCTGCAGGCGCCTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

246

Amino Acids

27.94

Weight (kDa)

5.58

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	36 - 244	1.3e-80	O-methyltransferase
Methyltransf_24	PF13578	83 - 189	1.6e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	726
AciI	CCGC	2 cut(s)	666, 699
AclWI	GGATC	1 cut(s)	665
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	2 cut(s)	242, 604
AcyI	GRCGYC	1 cut(s)	727
AdeI	CACNNNGTG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	3 cut(s)	308, 451, 723
AgsI	TTSAA	2 cut(s)	130, 683
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	6 cut(s)	11, 465, 520, 532, 557, 657
AluI	AGCT	6 cut(s)	11, 465, 520, 532, 557, 657
AlwI	GGATC	1 cut(s)	665
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	5 cut(s)	5, 8, 166, 462, 520
ApoI	RAATTY	1 cut(s)	626
Asp700I	GAANNNNTTC	2 cut(s)	656, 687
AspLEI	GCGC	1 cut(s)	729
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	706
AvaI	CYCGRG	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	597
BanI	GGYRCC	1 cut(s)	726
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	5 cut(s)	17, 20, 178, 474, 507
BccI	CCATC	3 cut(s)	302, 642, 701
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	721
BfoI	RGCGCY	1 cut(s)	730
BisI	GCNGC	6 cut(s)	6, 9, 167, 463, 521, 666
BlsI	GCNGC	6 cut(s)	7, 10, 168, 464, 522, 667
Bme1390I	CCNGG	2 cut(s)	92, 379
BmeT110I	CYCGRG	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	728
BmrFI	CCNGG	2 cut(s)	92, 379
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	248
BplI	GAGNNNNNCTC	2 cut(s)	696, 728
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	379
Bsa29I	ATCGAT	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	727
BsaJI	CCNNGG	3 cut(s)	147, 378, 445
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 451, 723
Bse1I	ACTGG	1 cut(s)	271
Bse21I	CCTNAGG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	147, 378, 445
BseGI	GGATG	2 cut(s)	87, 490
BseLI	CCNNNNNNNGG	3 cut(s)	308, 451, 723
BseMII	CTCAG	2 cut(s)	588, 597
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	2 cut(s)	614, 617
BseXI	GCAGC	5 cut(s)	17, 20, 178, 474, 507
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	726
BshVI	ATCGAT	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	378, 702
BslI	CCNNNNNNNGG	3 cut(s)	308, 451, 723
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	109
Bsp143I	GATC	5 cut(s)	31, 225, 328, 433, 670
BspACI	CCGC	2 cut(s)	666, 699
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	2 cut(s)	589, 596
BspDI	ATCGAT	1 cut(s)	327
BspHI	TCATGA	2 cut(s)	228, 514
BspLI	GGNNCC	1 cut(s)	728
BspMAI	CTGCAG	1 cut(s)	725
BspPI	GGATC	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	726
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	147, 378, 445
BssMI	GATC	5 cut(s)	31, 225, 328, 433, 670
BssNI	GRCGYC	1 cut(s)	727
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	3 cut(s)	151, 446, 573
Bst6I	CTCTTC	2 cut(s)	15, 282
BstACI	GRCGYC	1 cut(s)	727
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	5 cut(s)	43, 137, 428, 583, 597
BstDSI	CCRYGG	2 cut(s)	147, 445
BstF5I	GGATG	2 cut(s)	87, 490
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	5 cut(s)	34, 228, 331, 436, 673
BstMBI	GATC	5 cut(s)	31, 225, 328, 433, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 377
BstSFI	CTRYAG	1 cut(s)	721
BstV1I	GCAGC	5 cut(s)	17, 20, 178, 474, 507
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
Bsu15I	ATCGAT	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	2 cut(s)	147, 445
BtsCI	GGATG	2 cut(s)	87, 490
BtsIMutI	CAGTG	2 cut(s)	264, 569
Cac8I	GCNNGC	1 cut(s)	725
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	2 cut(s)	228, 514
CfoI	GCGC	1 cut(s)	729
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	4 cut(s)	71, 214, 229, 515
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	5 cut(s)	43, 137, 428, 583, 597
DinI	GGCGCC	1 cut(s)	728
DpnI	GATC	5 cut(s)	33, 227, 330, 435, 672
DpnII	GATC	5 cut(s)	31, 225, 328, 433, 670
DraIII	CACNNNGTG	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	15, 282
EarI	CTCTTC	2 cut(s)	15, 282
EciI	GGCGGA	1 cut(s)	688
Eco57I	CTGAAG	2 cut(s)	242, 604
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	728
EheI	GGCGCC	1 cut(s)	728
FaeI	CATG	4 cut(s)	74, 217, 232, 518
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 383, 415
FatI	CATG	4 cut(s)	70, 213, 228, 514
FauNDI	CATATG	1 cut(s)	639
Fnu4HI	GCNGC	6 cut(s)	6, 9, 167, 463, 521, 666
FokI	GGATG	2 cut(s)	74, 497
Fsp4HI	GCNGC	6 cut(s)	6, 9, 167, 463, 521, 666
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	6 cut(s)	6, 9, 167, 463, 521, 666
HaeII	RGCGCY	1 cut(s)	730
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	378, 702
HhaI	GCGC	1 cut(s)	729
Hin1I	GRCGYC	1 cut(s)	727
Hin1II	CATG	4 cut(s)	74, 217, 232, 518
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	2 cut(s)	683, 711
HpaII	CCGG	2 cut(s)	378, 702
HphI	GGTGA	1 cut(s)	706
Hpy188I	TCNGA	3 cut(s)	65, 222, 371
Hpy188III	TCNNGA	4 cut(s)	154, 229, 332, 515
HpyAV	CCTTC	3 cut(s)	86, 191, 452
HpyCH4III	ACNGT	3 cut(s)	151, 446, 573
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	2 cut(s)	296, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
HpyF3I	CTNAG	5 cut(s)	43, 137, 428, 583, 597
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	727
Hsp92II	CATG	4 cut(s)	74, 217, 232, 518
HspAI	GCGC	1 cut(s)	727
KasI	GGCGCC	1 cut(s)	726
Kzo9I	GATC	5 cut(s)	31, 225, 328, 433, 670
LmnI	GCTCC	2 cut(s)	66, 385
Lsp1109I	GCAGC	5 cut(s)	17, 20, 178, 474, 507
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	504
MalI	GATC	5 cut(s)	33, 227, 330, 435, 672
MboI	GATC	5 cut(s)	31, 225, 328, 433, 670
MboII	GAAGA	8 cut(s)	32, 235, 250, 253, 269, 467, 655, 683
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	1 cut(s)	670
MluCI	AATT	2 cut(s)	125, 626
Mly113I	GGCGCC	1 cut(s)	727
MlyI	GAGTC	1 cut(s)	705
MmeI	TCCRAC	2 cut(s)	334, 523
MnlI	CCTC	6 cut(s)	343, 539, 592, 595, 598, 728
MroXI	GAANNNNTTC	2 cut(s)	656, 687
MseI	TTAA	1 cut(s)	441
MspI	CCGG	2 cut(s)	378, 702
MspR9I	CCNGG	2 cut(s)	92, 379
MunI	CAATTG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
NarI	GGCGCC	1 cut(s)	727
NciI	CCSGG	1 cut(s)	379
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	5 cut(s)	31, 225, 328, 433, 670
NlaIII	CATG	4 cut(s)	74, 217, 232, 518
NlaIV	GGNNCC	1 cut(s)	728
PagI	TCATGA	2 cut(s)	228, 514
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	2 cut(s)	656, 687
PfeI	GAWTC	1 cut(s)	683
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	6 cut(s)	7, 10, 168, 464, 522, 667
PleI	GAGTC	1 cut(s)	705
PluTI	GGCGCC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	728
PstI	CTGCAG	1 cut(s)	725
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	670
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	6 cut(s)	6, 9, 167, 463, 521, 666
Sau3AI	GATC	5 cut(s)	31, 225, 328, 433, 670
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	2 cut(s)	92, 379
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	1 cut(s)	721
SfoI	GGCGCC	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	125, 626
SsiI	CCGC	2 cut(s)	666, 699
SspDI	GGCGCC	1 cut(s)	726
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	2 cut(s)	90, 377
TaaI	ACNGT	3 cut(s)	151, 446, 573
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	2 cut(s)	30, 327
TasI	AATT	2 cut(s)	125, 626
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	271, 576
TseI	GCWGC	5 cut(s)	5, 8, 166, 462, 520
TspDTI	ATGAA	5 cut(s)	210, 245, 355, 542, 656
TspRI	CASTG	2 cut(s)	271, 576
XapI	RAATTY	1 cut(s)	626
XmnI	GAANNNNTTC	2 cut(s)	656, 687
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.