Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

54998649 .. 55004821

Gene Structure 6173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39919

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCAGTACATCCTAGAAACAAGCTGCTACCCGAGAGAACACGAGCTATTGAAGCAACTAAGGGAAGCAACTTTCGAGAAATACCAGTTCTGGAGCCAGATCCTTACCGGCTATTCTCTTCTTACTGTTGCTCCTGCACTACCTGATGATGGCAAAATCACAGCCATAGATCCAAATAGAGAAGCCTATGAGTTTGGACAGCCATTCATTCAGAGGGCTGGGGTGGAGCATAAGATTAACTTCTTTCCGTCAGATGCAGGCAAGGAACCAGGAATTAAATTTGAGGGCAAGGAAGAAGGGAACTTTGACTTCGCATTTGTGGATGCGGACAAGCAAAACTACCTCAACTATCACGAGCTTCTAATGAAACTTGTTAAGGTTGGTGGAATCATAGCTTACGATAACACACTGTGGTTTGGGACAGTTGCAGAACCTGAGGAAAAGGTGAAGGAATTGGCTTTAAGGAAAGGCAGAAATGATGTGGTTGTAGTGAACAATTTTCTAGCCGCTGACCCTCGTGTCGAATTGGCTCTTGTTTCCATTGGGGATGGCCTCACCCTCTGCAGGCGCCTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

192

Amino Acids

21.84

Weight (kDa)

5.19

Isoelectric Point (pI)

25.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	34 - 191	5e-56	O-methyltransferase
Methyltransf_24	PF13578	36 - 135	2.8e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	567
AciI	CCGC	2 cut(s)	326, 507
AclWI	GGATC	2 cut(s)	94, 164
AcsI	RAATTY	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	568
AdeI	CACNNNGTG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	149, 564
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	4 cut(s)	24, 46, 358, 395
AluI	AGCT	4 cut(s)	24, 46, 358, 395
AlwI	GGATC	2 cut(s)	94, 164
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspLEI	GCGC	1 cut(s)	570
AsuHPI	GGTGA	2 cut(s)	457, 547
AvaI	CYCGRG	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	567
BauI	CACGAG	3 cut(s)	41, 353, 516
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	2 cut(s)	143, 542
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	2 cut(s)	14, 503
BfmI	CTRYAG	1 cut(s)	562
BfoI	RGCGCY	1 cut(s)	571
BisI	GCNGC	2 cut(s)	25, 507
BlsI	GCNGC	2 cut(s)	26, 508
Bme1390I	CCNGG	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	31
BmiI	GGNNCC	3 cut(s)	95, 267, 569
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	244, 313
BpmI	CTGGAG	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 564
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	270
BseGI	GGATG	3 cut(s)	9, 328, 553
BseLI	CCNNNNNNNGG	2 cut(s)	149, 564
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	552
BshNI	GGYRCC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	149, 564
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	552
BsoBI	CYCGRG	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	99, 169
BspACI	CCGC	2 cut(s)	326, 507
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	95, 267, 569
BspMAI	CTGCAG	1 cut(s)	566
BspPI	GGATC	2 cut(s)	94, 164
BspT107I	GGYRCC	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	107
BssMI	GATC	2 cut(s)	99, 169
BssNI	GRCGYC	1 cut(s)	568
BssSI	CACGAG	3 cut(s)	41, 353, 516
Bst2BI	CACGAG	3 cut(s)	41, 353, 516
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	127, 411, 424
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	259, 566
BstDEI	CTNAG	2 cut(s)	59, 435
BstF5I	GGATG	3 cut(s)	9, 328, 553
BstH2I	RGCGCY	1 cut(s)	571
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	2 cut(s)	102, 172
BstMBI	GATC	2 cut(s)	99, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	562
BstV1I	GCAGC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	99, 169
BstYI	RGATCY	2 cut(s)	99, 169
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	9, 328, 553
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	259, 566
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	570
Cfr10I	RCCGGY	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	7
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	59, 435
DinI	GGCGCC	1 cut(s)	569
DpnI	GATC	2 cut(s)	101, 171
DpnII	GATC	2 cut(s)	99, 169
DraIII	CACNNNGTG	1 cut(s)	411
DrdI	GACNNNNNNGTC	1 cut(s)	518
DseDI	GACNNNNNNGTC	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	268
EgeI	GGCGCC	1 cut(s)	569
EheI	GGCGCC	1 cut(s)	569
FaiI	YATR	4 cut(s)	167, 189, 231, 392
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	433
Fnu4HI	GCNGC	2 cut(s)	25, 507
FokI	GGATG	2 cut(s)	335, 560
Fsp4HI	GCNGC	2 cut(s)	25, 507
FspBI	CTAG	2 cut(s)	14, 503
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	2 cut(s)	25, 507
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	571
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	570
Hin1I	GRCGYC	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	457, 547
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	2 cut(s)	213, 253
Hpy188III	TCNNGA	3 cut(s)	76, 91, 353
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	290, 442
HpyCH4III	ACNGT	3 cut(s)	127, 411, 424
HpyCH4V	TGCA	5 cut(s)	4, 137, 257, 428, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	59, 435
Hsp92I	GRCGYC	1 cut(s)	568
HspAI	GCGC	1 cut(s)	568
KasI	GGCGCC	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	99, 169
LmnI	GCTCC	3 cut(s)	93, 136, 226
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	2 cut(s)	244, 313
MaeI	CTAG	2 cut(s)	14, 503
MalI	GATC	2 cut(s)	101, 171
MboI	GATC	2 cut(s)	99, 169
MboII	GAAGA	2 cut(s)	110, 305
MflI	RGATCY	2 cut(s)	99, 169
MluCI	AATT	5 cut(s)	273, 278, 452, 496, 524
Mly113I	GGCGCC	1 cut(s)	568
MnlI	CCTC	7 cut(s)	207, 277, 353, 430, 525, 563, 569
MseI	TTAA	4 cut(s)	237, 276, 375, 461
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	568
NdeII	GATC	2 cut(s)	99, 169
NlaIV	GGNNCC	3 cut(s)	95, 267, 569
PfeI	GAWTC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	26, 508
PluTI	GGCGCC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	95, 267, 569
PstI	CTGCAG	1 cut(s)	566
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	99, 169
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	4 cut(s)	237, 276, 375, 461
SatI	GCNGC	2 cut(s)	25, 507
Sau3AI	GATC	2 cut(s)	99, 169
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	9 cut(s)	26, 48, 145, 345, 360, 381, 397, 436, 447
SfaNI	GCATC	2 cut(s)	244, 313
SfcI	CTRYAG	1 cut(s)	562
SfoI	GGCGCC	1 cut(s)	569
Sse9I	AATT	5 cut(s)	273, 278, 452, 496, 524
SsiI	CCGC	2 cut(s)	326, 507
SspDI	GGCGCC	1 cut(s)	567
SspMI	CTAG	2 cut(s)	14, 503
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	127, 411, 424
TaqI	TCGA	2 cut(s)	75, 522
TasI	AATT	5 cut(s)	273, 278, 452, 496, 524
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	4 cut(s)	237, 276, 375, 461
Tru9I	TTAA	4 cut(s)	237, 276, 375, 461
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	196, 380
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	414
XapI	RAATTY	1 cut(s)	278
XspI	CTAG	2 cut(s)	14, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.