Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

41223852 .. 41224854

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0243400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGGGCTTCATCCAGCGCTTCATCCAAATCCAAGAAATCCACCAAAAGCAAGGGTGTCAAAGACATTGCATTAACAGGTGTAGGCAACCTCATCAAGCTCCTCCCTACCGGCACGGTATTCTTGTTCCAGTTCCTCAACCCCGTTTTAACCAACAATGGCCAATGCAACCTCCCCGTCAACAAGATTCTAAGCGCCATTCTCATTGTCGTTTCCGCCTTCTCTTGCTGCTTTGCTTCCTTCACCGACAGTTACACCGGCAGTGATGGACAAATTCACTATGGAATTGCAACAACAAAGGGTCTTTGGCCCTCAACCAGTTCTGGCTCTGTGGACTTGTCTGCTTACAAGCTTCGGGTTGGGGACTTTGTGCATGCCTTCTTTTCCTTGATCGTGTTTGCAGGGCTATCACTTTTGGATTCCAACACTGTGAGGTGCTTCTATCCTGCATTTGAGTCCACTGAGAAGGTTCTGCTCCAGGCGTTGCCTCCTGTAATTGGCACTATTGCTGGTGCTGTCTTTGTTCTGTTCCCTAATACACGCCACGGAATTGGGTACCCTTCTTCAAGTTCAGATTCTTCAAAAGACTCTGAGGACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

200

Amino Acids

21.05

Weight (kDa)

8.67

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	27 - 186	2.5e-63	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	555
AciI	CCGC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	1 cut(s)	557
AfeI	AGCGCT	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	567, 582
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	2 cut(s)	100, 352
AluI	AGCT	2 cut(s)	100, 352
Aor51HI	AGCGCT	1 cut(s)	19
AoxI	GGCC	2 cut(s)	160, 308
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	555
AspLEI	GCGC	2 cut(s)	20, 197
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	479
BfaI	CTAG	1 cut(s)	601
BfoI	RGCGCY	2 cut(s)	21, 198
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	2 cut(s)	110, 257
Bse1I	ACTGG	2 cut(s)	130, 318
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	11, 23
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	453, 582
BseNI	ACTGG	2 cut(s)	130, 318
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	2 cut(s)	162, 310
BshNI	GGYRCC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	111, 258
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	162, 310
Bsp143I	GATC	1 cut(s)	390
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	162, 310
BspCNI	CTCAG	2 cut(s)	454, 583
BspLI	GGNNCC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	110, 257
BsrI	ACTGG	2 cut(s)	130, 318
BssAI	RCCGGY	2 cut(s)	110, 257
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	118, 251, 430
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	191, 462, 591
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	2 cut(s)	11, 23
BstH2I	RGCGCY	2 cut(s)	21, 198
BstHHI	GCGC	2 cut(s)	20, 197
BstKTI	GATC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	162, 310
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	11, 23
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	268, 426, 459
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	2 cut(s)	20, 197
Cfr10I	RCCGGY	2 cut(s)	110, 257
Cfr13I	GGNCC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	7 cut(s)	8, 100, 162, 310, 327, 352, 406
CviKI_1	RGCY	7 cut(s)	8, 100, 162, 310, 327, 352, 406
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	3 cut(s)	191, 462, 591
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
EaeI	YGGCCR	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	477
FaeI	CATG	1 cut(s)	377
FaiI	YATR	2 cut(s)	282, 375
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	601
GlaI	GCGC	2 cut(s)	19, 196
GluI	GCNGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	461
HaeII	RGCGCY	2 cut(s)	21, 198
HaeIII	GGCC	2 cut(s)	162, 310
HapII	CCGG	2 cut(s)	111, 258
HhaI	GCGC	2 cut(s)	20, 197
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	2 cut(s)	18, 195
HinP1I	GCGC	2 cut(s)	18, 195
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	6 cut(s)	187, 419, 455, 575, 587, 596
HpaII	CCGG	2 cut(s)	111, 258
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	181, 334, 459
Hpy188I	TCNGA	2 cut(s)	574, 592
Hpy8I	GTNNAC	3 cut(s)	181, 334, 459
HpyAV	CCTTC	5 cut(s)	229, 250, 388, 460, 570
HpyCH4III	ACNGT	3 cut(s)	118, 251, 430
HpyCH4V	TGCA	6 cut(s)	71, 168, 290, 373, 401, 449
HpyF3I	CTNAG	3 cut(s)	191, 462, 591
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	2 cut(s)	18, 195
KpnI	GGTACC	1 cut(s)	559
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	2 cut(s)	105, 480
Lsp1109I	GCAGC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	601
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	2 cut(s)	555, 570
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	4 cut(s)	273, 285, 495, 549
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	464, 581, 590
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	8 cut(s)	101, 113, 146, 182, 322, 426, 498, 586
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	74, 149
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	2 cut(s)	111, 258
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	557
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	187, 419, 575
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	3 cut(s)	463, 581, 590
PpsI	GAGTC	3 cut(s)	463, 581, 590
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	557
PspPI	GGNCC	1 cut(s)	309
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	74, 149
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	3 cut(s)	464, 581, 590
ScrFI	CCNGG	1 cut(s)	479
SetI	ASST	7 cut(s)	82, 93, 102, 174, 354, 437, 471
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	4 cut(s)	273, 285, 495, 549
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	1 cut(s)	601
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	118, 251, 430
TasI	AATT	4 cut(s)	273, 285, 495, 549
TfiI	GAWTC	3 cut(s)	187, 419, 575
Tru1I	TTAA	2 cut(s)	74, 149
Tru9I	TTAA	2 cut(s)	74, 149
TscAI	CASTG	3 cut(s)	268, 433, 466
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	12
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	3 cut(s)	268, 433, 466
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.