FvH4_1g06880

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000994
Physical Location & Seq
Reverse (-)
3638622 .. 3639307
686 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06880.t1

Sequence Viewer

Length: 216 bp
ATGCATTCGCCATTTACGCCAATCCAGCAAAGGACCTCCAAAGGTAGTGGACTAGGTCAACTCCCAGAGCTCTCCGAGAAAGAATTGCTGCAGGATTGGAGGGATTGTTATATATCAATATATGATAACACACTATGGGGAGGGACAGTGGCTAAGCCTGAAGAGGTAGTTCCAGAGGGCAAAAGGGAGTTGAGGCGCCATGCCATTGAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

72

Amino Acids

8.19

Weight (kDa)

5.6

Isoelectric Point (pI)

82.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 196
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 33
AvaII GGWCC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 75
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 199
BisI GCNGC 1 cut(s) 89
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 196
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 132, 162
BseXI GCAGC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 72
BslFI GGGAC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1720I GCTNAGC 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 16, 25
BstSFI CTRYAG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 153
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 33
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 70, 152, 157
CviKI_1 RGCY 3 cut(s) 70, 152, 157
DdeI CTNAG 1 cut(s) 153
DinI GGCGCC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 72
EgeI GGCGCC 1 cut(s) 197
EheI GGCGCC 1 cut(s) 197
FaeI CATG 1 cut(s) 203
FaiI YATR 6 cut(s) 111, 113, 121, 123, 136, 201
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 199
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 50, 59
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 50, 59
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 4, 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 25
HpyF3I CTNAG 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 196
KasI GGCGCC 1 cut(s) 195
LpnPI CCDG 5 cut(s) 38, 77, 78, 171, 186
Lsp1109I GCAGC 1 cut(s) 75
MaeI CTAG 1 cut(s) 53
MboII GAAGA 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 83
Mly113I GGCGCC 1 cut(s) 196
MnlI CCTC 6 cut(s) 46, 93, 134, 157, 169, 186
Mph1103I ATGCAT 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 4
MwoI GCNNNNNNNGC 2 cut(s) 16, 25
NarI GGCGCC 1 cut(s) 196
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 90
PluTI GGCGCC 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 33
PspPPI RGGWCCY 1 cut(s) 33
PstI CTGCAG 1 cut(s) 93
PsyI GACNNNGTC 1 cut(s) 54
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 1 cut(s) 89
Sau96I GGNCC 1 cut(s) 33
SduI GDGCHC 1 cut(s) 72
SetI ASST 5 cut(s) 38, 46, 58, 72, 168
SfcI CTRYAG 1 cut(s) 89
SfoI GGCGCC 1 cut(s) 197
SgeI CNNG 8 cut(s) 37, 65, 77, 88, 104, 170, 185, 212
SinI GGWCC 1 cut(s) 33
Sse9I AATT 1 cut(s) 83
SspDI GGCGCC 1 cut(s) 195
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 72
TaaI ACNGT 1 cut(s) 148
TasI AATT 1 cut(s) 83
TscAI CASTG 1 cut(s) 153
TseI GCWGC 1 cut(s) 88
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 33
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.