Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

47639549 .. 47641035

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG306900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAATGTGCCTGTGGATGAAGGGCTGCTTCTGTCCATGTTTCTGAAGATGATGAATGCAAAGAAGACACTGGAACTTGGAGTATTTACTGGCTATTCTCTTCTTACTGCTGCTCTTGCACTACCTGATGATGGCAGAGGCAAGGAAGAAGGGAACTTTGACTTCGCATTTGTGGATGCGGACAAGCAAAACTACCTCAACTATCACGAGCTTCTAATGAAACTTGTTAAGGTTGGTGGAATCATAGCTTACGATAACACACTGTGGTTTGGGACAGTTGCAGAACCTGAGGAAAAGGTGAAGAAATTGGCTTTAAGGAAAGGCAGAAATGATGTGGTTGAAGTGAACAATTTTCTAGCCGCTGACCCTCGTGTCGAATTGGCTCTTGTTTCCATTGGGGATGGCCTCACCCTCTGCAGGCGCCTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

143

Amino Acids

15.89

Weight (kDa)

5.4

Isoelectric Point (pI)

20.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	1 - 46	4.7e-16	O-methyltransferase
Methyltransf_3	PF01596	48 - 142	9.1e-35	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	420
AciI	CCGC	2 cut(s)	179, 360
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	421
AdeI	CACNNNGTG	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	131, 417
AgsI	TTSAA	1 cut(s)	341
AluBI	AGCT	2 cut(s)	211, 248
AluI	AGCT	2 cut(s)	211, 248
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	25, 110
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	310, 400
AxyI	CCTNAGG	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	420
BauI	CACGAG	2 cut(s)	206, 369
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	12, 97
BccI	CCATC	2 cut(s)	125, 395
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	3 cut(s)	26, 111, 360
BlsI	GCNGC	3 cut(s)	27, 112, 361
BmiI	GGNNCC	1 cut(s)	422
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 417
Bse1I	ACTGG	2 cut(s)	75, 94
Bse21I	CCTNAGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	22, 181, 406
BseLI	CCNNNNNNNGG	2 cut(s)	131, 417
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	75, 94
BseXI	GCAGC	2 cut(s)	12, 97
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	131, 417
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	405
BspACI	CCGC	2 cut(s)	179, 360
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	75, 94
BssNI	GRCGYC	1 cut(s)	421
BssSI	CACGAG	2 cut(s)	206, 369
Bst2BI	CACGAG	2 cut(s)	206, 369
Bst4CI	ACNGT	2 cut(s)	264, 277
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	22, 181, 406
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	12, 97
BstV2I	GAAGAC	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	22, 181, 406
BtsIMutI	CAGTG	2 cut(s)	68, 260
Cac8I	GCNNGC	1 cut(s)	419
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	423
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	8 cut(s)	25, 93, 211, 248, 311, 359, 383, 405
CviKI_1	RGCY	8 cut(s)	25, 93, 211, 248, 311, 359, 383, 405
DdeI	CTNAG	1 cut(s)	288
DinI	GGCGCC	1 cut(s)	422
DraIII	CACNNNGTG	1 cut(s)	264
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	422
EheI	GGCGCC	1 cut(s)	422
FaeI	CATG	1 cut(s)	40
FaiI	YATR	2 cut(s)	38, 245
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	26, 111, 360
FokI	GGATG	3 cut(s)	29, 188, 413
Fsp4HI	GCNGC	3 cut(s)	26, 111, 360
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	3 cut(s)	26, 111, 360
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	240
HphI	GGTGA	2 cut(s)	310, 400
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	14, 143
HpyCH4III	ACNGT	2 cut(s)	264, 277
HpyCH4V	TGCA	4 cut(s)	59, 119, 281, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	421
KasI	GGCGCC	1 cut(s)	420
LpnPI	CCDG	6 cut(s)	24, 56, 75, 138, 300, 403
Lsp1109I	GCAGC	2 cut(s)	12, 97
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	356
MboII	GAAGA	5 cut(s)	58, 76, 92, 158, 313
MluCI	AATT	3 cut(s)	305, 349, 377
Mly113I	GGCGCC	1 cut(s)	421
MnlI	CCTC	6 cut(s)	131, 206, 283, 378, 416, 422
MseI	TTAA	2 cut(s)	228, 314
MspA1I	CMGCKG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	116
NarI	GGCGCC	1 cut(s)	421
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	422
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	27, 112, 361
PluTI	GGCGCC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	228, 314
SatI	GCNGC	3 cut(s)	26, 111, 360
SetI	ASST	7 cut(s)	127, 198, 213, 234, 250, 289, 300
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	415
SfoI	GGCGCC	1 cut(s)	422
Sse9I	AATT	3 cut(s)	305, 349, 377
SsiI	CCGC	2 cut(s)	179, 360
SspDI	GGCGCC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	264, 277
TaqI	TCGA	1 cut(s)	375
TasI	AATT	3 cut(s)	305, 349, 377
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	228, 314
Tru9I	TTAA	2 cut(s)	228, 314
TscAI	CASTG	2 cut(s)	75, 267
TseI	GCWGC	2 cut(s)	25, 110
TspDTI	ATGAA	4 cut(s)	17, 33, 68, 233
TspRI	CASTG	2 cut(s)	75, 267
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.