Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

55014781 .. 55016418

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTTCTGAAGATGATGAATGCAAAGAAAACATTGGAACTTGGAGTGTTTACTGGCTATTCTCTTCTCAGTACTGCTCTTGCACTACCTGCTGATGGCAAAATAACAGCAATTGATCCAGATAAAGAGGCCTACGAGTTTGGACTGCCATTCTTTCAAAAGGCTGGGGTGGAGCATAAAATTGACTTCTTTCACTCAGATGCCTTCACAGTCTTAAATGATCTCATTAGCAGTGGCAAGGAAGAAGGGAGCTTCGATTTTGCATTTGTGGATGCGGACAAGCAAAACTATCTCAAGTATCATGAGCTTCTAATGAAACTTGTTAAGGTTGGTGGAATCTTAGCTTACGATAACACACTGTGGTTTGGAACAGTTGCAGAACCTGAGGAAATGATGAAGGAATCATATTTAAGGGAAGGCAGAAATGATGTGATTGAATTGAACAATTATCTAGCCGCCGATCCTCGTGTCGAATTAGCTCTTGTTTCTATTGGGGATGGCCTCACCCTCTGCAGACGCCTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

175

Amino Acids

19.68

Weight (kDa)

4.81

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	1 - 174	5e-71	O-methyltransferase
Methyltransf_24	PF13578	12 - 118	2e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
AciI	CCGC	2 cut(s)	275, 456
AclWI	GGATC	2 cut(s)	110, 455
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	158, 437, 442
AluBI	AGCT	4 cut(s)	252, 307, 344, 479
AluI	AGCT	4 cut(s)	252, 307, 344, 479
AlwI	GGATC	2 cut(s)	110, 455
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	129, 499
AsuHPI	GGTGA	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	384
BauI	CACGAG	1 cut(s)	465
BccI	CCATC	2 cut(s)	89, 491
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
BmcAI	AGTACT	1 cut(s)	73
BmsI	GCATC	2 cut(s)	190, 262
BpuEI	CTTGAG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	58
Bse21I	CCTNAGG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	277, 502
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	82, 210, 375
BseNI	ACTGG	1 cut(s)	58
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	2 cut(s)	131, 501
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	131, 501
Bsp143I	GATC	3 cut(s)	115, 220, 460
BspACI	CCGC	2 cut(s)	275, 456
BspANI	GGCC	2 cut(s)	131, 501
BspCNI	CTCAG	3 cut(s)	81, 209, 376
BspHI	TCATGA	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	2 cut(s)	110, 455
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	3 cut(s)	115, 220, 460
BssNI	GRCGYC	1 cut(s)	517
BssSI	CACGAG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	211, 360, 373
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	517
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	68, 196, 340, 384
BstF5I	GGATG	2 cut(s)	277, 502
BstKTI	GATC	3 cut(s)	118, 223, 463
BstMBI	GATC	3 cut(s)	115, 220, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	131, 501
BtsCI	GGATG	2 cut(s)	277, 502
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	238, 356
BveI	ACCTGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	9 cut(s)	57, 131, 164, 252, 307, 344, 455, 479, 501
CviKI_1	RGCY	9 cut(s)	57, 131, 164, 252, 307, 344, 455, 479, 501
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	4 cut(s)	68, 196, 340, 384
DpnI	GATC	3 cut(s)	117, 222, 462
DpnII	GATC	3 cut(s)	115, 220, 460
DraIII	CACNNNGTG	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	305
FaiI	YATR	3 cut(s)	177, 303, 406
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	2 cut(s)	284, 509
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	1 cut(s)	456
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	131, 501
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	1 cut(s)	305
HinfI	GANTC	2 cut(s)	336, 401
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	9, 199
Hpy188III	TCNNGA	2 cut(s)	119, 302
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	4 cut(s)	214, 239, 391, 410
HpyCH4III	ACNGT	3 cut(s)	211, 360, 373
HpyCH4V	TGCA	5 cut(s)	23, 83, 263, 377, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	4 cut(s)	68, 196, 340, 384
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	3 cut(s)	115, 220, 460
LmnI	GCTCC	2 cut(s)	172, 249
LpnPI	CCDG	5 cut(s)	39, 102, 132, 150, 396
LweI	GCATC	2 cut(s)	190, 262
MaeI	CTAG	1 cut(s)	452
MalI	GATC	3 cut(s)	117, 222, 462
MboI	GATC	3 cut(s)	115, 220, 460
MboII	GAAGA	3 cut(s)	22, 56, 254
MfeI	CAATTG	1 cut(s)	111
MluCI	AATT	5 cut(s)	111, 180, 437, 445, 473
MnlI	CCTC	5 cut(s)	121, 379, 474, 512, 518
MseI	TTAA	3 cut(s)	215, 324, 410
MslI	CAYNNNNRTG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	115, 220, 460
NlaIII	CATG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	131
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	336, 401
PkrI	GCNGC	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	515
PstNI	CAGNNNCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	215, 324, 410
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	3 cut(s)	115, 220, 460
ScaI	AGTACT	1 cut(s)	73
SetI	ASST	7 cut(s)	91, 254, 309, 330, 346, 385, 481
SfaNI	GCATC	2 cut(s)	190, 262
SfcI	CTRYAG	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	5 cut(s)	111, 180, 437, 445, 473
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	2 cut(s)	275, 456
SspMI	CTAG	1 cut(s)	452
StuI	AGGCCT	1 cut(s)	131
TaaI	ACNGT	3 cut(s)	211, 360, 373
TaqI	TCGA	2 cut(s)	255, 471
TasI	AATT	5 cut(s)	111, 180, 437, 445, 473
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	336, 401
Tru1I	TTAA	3 cut(s)	215, 324, 410
Tru9I	TTAA	3 cut(s)	215, 324, 410
TscAI	CASTG	2 cut(s)	238, 363
TspDTI	ATGAA	3 cut(s)	32, 329, 410
TspRI	CASTG	2 cut(s)	238, 363
XspI	CTAG	1 cut(s)	452
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.