Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

26210269 .. 26213118

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCAGCAGCTACGAAAGAAGACAAGCTCAAACTTCCAATCTTACCAGACAAGATCATACTCAAAAGCCCTGCCTTTCTCAAGTACATCCTGGAAACCAGCTGCTACCCGAGAGAACACGAGCAACTGAAGCAACTGCGGGAAGCCACGATCAAGAAATATGAGCGGCTGAGTATTATGAATGTGCCTGTTGATGAAGGTCTGCTTATCTCAATGCTTCTGAAAATCATGAATGCGAAGAAAACGTTGGAGATTGGAGTATTTACTGGTTACTCTCTTCTCACTACTGCTCTTGCACTTCCTGCTGATGGCAAAATAGTAGCAATCGATCCGGATAAAGAAGCCTACGAGGTTGGATTGCCATTCATCAGAAAGGCTGGGGTGGAGCATAAGATTGACTTCTATGAATCAAATGCCATGTTAGTCCTAACTGATCTCGTCCACAATGAAAAGAAAGAAGATATCTTTGATTTTGCGTTTGTGGATGCTGATAAGAACAACTACATCAAATATCATGAGCTGCTACTAAAGCTTGTGAAGGTGGGAGGAATAATAGCTTATGACAACACTTTGTGGTTTGGCGCAGTAGCAGAACCTGACGATGAGGAGGTACAGGTACCGGAGGTTGAATTTATCAGGAAATACAAGCCTTATGTGAAGGAACTGAACAGCTTCCTCGCCACAGATCCACGTATCGAATTAGTTCTTCTTTCCGTCGGAGATGGACTTACCCTATGCAGGCGCCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

251

Amino Acids

28.44

Weight (kDa)

5.41

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	13 - 224	5.3e-79	O-methyltransferase
Methyltransf_24	PF13578	58 - 164	1.5e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	616
AccB1I	GGYRCC	2 cut(s)	616, 741
AccBSI	CCGCTC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	2 cut(s)	139, 166
AclI	AACGTT	1 cut(s)	245
AclWI	GGATC	2 cut(s)	323, 680
AcsI	RAATTY	1 cut(s)	629
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	742
AdeI	CACNNNGTG	1 cut(s)	573
AfaI	GTAC	3 cut(s)	86, 612, 618
AfiI	CCNNNNNNNGG	2 cut(s)	308, 738
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	7 cut(s)	11, 28, 102, 520, 532, 557, 672
AluI	AGCT	7 cut(s)	11, 28, 102, 520, 532, 557, 672
AlwI	GGATC	2 cut(s)	323, 680
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	331
ApeKI	GCWGC	4 cut(s)	5, 8, 102, 520
ApoI	RAATTY	1 cut(s)	629
Asp700I	GAANNNNTTC	2 cut(s)	671, 702
Asp718I	GGTACC	1 cut(s)	616
AspLEI	GCGC	2 cut(s)	584, 744
AvaI	CYCGRG	1 cut(s)	109
BanI	GGYRCC	2 cut(s)	616, 741
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	4 cut(s)	17, 20, 89, 507
BccI	CCATC	2 cut(s)	302, 716
BciT130I	CCWGG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	745
BisI	GCNGC	5 cut(s)	6, 9, 103, 167, 521
BlsI	GCNGC	5 cut(s)	7, 10, 104, 168, 522
Bme1390I	CCNGG	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	618, 743
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	65
Bsa29I	ATCGAT	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	692
BsaHI	GRCGYC	1 cut(s)	742
BsaWI	WCCGGW	2 cut(s)	331, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 738
Bse1I	ACTGG	1 cut(s)	271
BseAI	TCCGGA	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	327
BseGI	GGATG	2 cut(s)	87, 490
BseLI	CCNNNNNNNGG	2 cut(s)	308, 738
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	4 cut(s)	17, 20, 89, 507
BseYI	CCCAGC	1 cut(s)	377
BshNI	GGYRCC	2 cut(s)	616, 741
BshVI	ATCGAT	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	332, 620
BslI	CCNNNNNNNGG	2 cut(s)	308, 738
BsmI	GAATGC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	109
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	54, 150, 328, 433, 685
BspACI	CCGC	2 cut(s)	139, 166
BspCNI	CTCAG	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	327
BspEI	TCCGGA	1 cut(s)	331
BspHI	TCATGA	2 cut(s)	228, 514
BspLI	GGNNCC	2 cut(s)	618, 743
BspPI	GGATC	2 cut(s)	323, 680
BspT107I	GGYRCC	2 cut(s)	616, 741
BsrBI	CCGCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	271
BssMI	GATC	5 cut(s)	54, 150, 328, 433, 685
BssNI	GRCGYC	1 cut(s)	742
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	742
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	87, 490
BstH2I	RGCGCY	1 cut(s)	745
BstHHI	GCGC	2 cut(s)	584, 744
BstKTI	GATC	5 cut(s)	57, 153, 331, 436, 688
BstMBI	GATC	5 cut(s)	54, 150, 328, 433, 685
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	4 cut(s)	17, 20, 89, 507
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
Bsu15I	ATCGAT	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	87, 490
Cac8I	GCNNGC	1 cut(s)	740
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	2 cut(s)	228, 514
CfoI	GCGC	2 cut(s)	584, 744
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	85, 611, 617
CviAII	CATG	3 cut(s)	229, 418, 515
CviQI	GTAC	3 cut(s)	85, 611, 617
DdeI	CTNAG	1 cut(s)	170
DinI	GGCGCC	1 cut(s)	743
DpnI	GATC	5 cut(s)	56, 152, 330, 435, 687
DpnII	GATC	5 cut(s)	54, 150, 328, 433, 685
DraIII	CACNNNGTG	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	463
EgeI	GGCGCC	1 cut(s)	743
EheI	GGCGCC	1 cut(s)	743
FaeI	CATG	3 cut(s)	232, 421, 518
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 383, 415
FatI	CATG	3 cut(s)	228, 417, 514
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	5 cut(s)	6, 9, 103, 167, 521
FokI	GGATG	2 cut(s)	74, 497
Fsp4HI	GCNGC	5 cut(s)	6, 9, 103, 167, 521
GlaI	GCGC	2 cut(s)	583, 743
GluI	GCNGC	5 cut(s)	6, 9, 103, 167, 521
GsaI	CCCAGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	745
HapII	CCGG	2 cut(s)	332, 620
HhaI	GCGC	2 cut(s)	584, 744
Hin1I	GRCGYC	1 cut(s)	742
Hin1II	CATG	3 cut(s)	232, 421, 518
Hin6I	GCGC	2 cut(s)	582, 742
HinP1I	GCGC	2 cut(s)	582, 742
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	2 cut(s)	332, 620
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	222, 371, 719
Hpy188III	TCNNGA	5 cut(s)	154, 229, 332, 515, 637
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	3 cut(s)	191, 532, 652
HpyCH4IV	ACGT	2 cut(s)	245, 691
HpyCH4V	TGCA	2 cut(s)	296, 738
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	2 cut(s)	245, 691
Hsp92I	GRCGYC	1 cut(s)	742
Hsp92II	CATG	3 cut(s)	232, 421, 518
HspAI	GCGC	2 cut(s)	582, 742
KasI	GGCGCC	1 cut(s)	741
Kpn2I	TCCGGA	1 cut(s)	331
KpnI	GGTACC	1 cut(s)	620
Kzo9I	GATC	5 cut(s)	54, 150, 328, 433, 685
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	4 cut(s)	17, 20, 89, 507
LweI	GCATC	1 cut(s)	475
MaeII	ACGT	2 cut(s)	245, 691
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	5 cut(s)	56, 152, 330, 435, 687
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	5 cut(s)	54, 150, 328, 433, 685
MboII	GAAGA	5 cut(s)	32, 250, 269, 470, 698
MflI	RGATCY	1 cut(s)	685
MluCI	AATT	2 cut(s)	629, 698
Mly113I	GGCGCC	1 cut(s)	742
MmeI	TCCRAC	3 cut(s)	228, 334, 697
MnlI	CCTC	6 cut(s)	343, 539, 598, 601, 616, 686
MroI	TCCGGA	1 cut(s)	331
MroXI	GAANNNNTTC	2 cut(s)	671, 702
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	2 cut(s)	332, 620
MspR9I	CCNGG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
NarI	GGCGCC	1 cut(s)	742
NdeII	GATC	5 cut(s)	54, 150, 328, 433, 685
NlaIII	CATG	3 cut(s)	232, 421, 518
NlaIV	GGNNCC	2 cut(s)	618, 743
PagI	TCATGA	2 cut(s)	228, 514
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	2 cut(s)	671, 702
PfeI	GAWTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	5 cut(s)	7, 10, 104, 168, 522
PluTI	GGCGCC	1 cut(s)	745
Ppu21I	YACGTR	1 cut(s)	692
Psp1406I	AACGTT	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	618, 743
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	102
RsaI	GTAC	3 cut(s)	86, 612, 618
RsaNI	GTAC	3 cut(s)	85, 611, 617
SatI	GCNGC	5 cut(s)	6, 9, 103, 167, 521
Sau3AI	GATC	5 cut(s)	54, 150, 328, 433, 685
ScrFI	CCNGG	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	475
SfoI	GGCGCC	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	629, 698
SsiI	CCGC	2 cut(s)	139, 166
SspDI	GGCGCC	1 cut(s)	741
StyD4I	CCNGG	1 cut(s)	90
TaiI	ACGT	2 cut(s)	248, 694
TaqI	TCGA	2 cut(s)	327, 696
TasI	AATT	2 cut(s)	629, 698
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	407
TseI	GCWGC	4 cut(s)	5, 8, 102, 520
TspDTI	ATGAA	6 cut(s)	194, 210, 245, 355, 420, 462
TspGWI	ACGGA	1 cut(s)	703
XapI	RAATTY	1 cut(s)	629
XmnI	GAANNNNTTC	2 cut(s)	671, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.