Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8207790.1

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 562

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8207790.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ggcaaggaagaagggagctttgacttcgcatttgtggatgctgacaaggagaactacatcaattatcacaagctgctagtaaagcttgttaaagttggtgggataatagattacgataacacactgtggtttggatcggttgcagaaccggaggagacggtggcgaaacctttaagggcaggcagaaatcatgtgattaagctgaacaactttctggcaggcgattctcgtgttgaactagcttttgtttcaatcggggatggcctcaccctatgcaggcgcctagcctctactgaaactaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

101

Amino Acids

11.19

Weight (kDa)

5.31

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	280
AdeI	CACNNNGTG	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	236, 252
AluBI	AGCT	5 cut(s)	18, 73, 85, 202, 242
AluI	AGCT	5 cut(s)	18, 73, 85, 202, 242
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspLEI	GCGC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	279
BauI	CACGAG	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	3 cut(s)	77, 239, 284
BfoI	RGCGCY	1 cut(s)	283
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	43, 265
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	279
BssMI	GATC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	126, 160
BstACI	GRCGYC	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	181, 220, 278
BstF5I	GGATG	2 cut(s)	43, 265
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	43, 265
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	181, 220, 278
CfoI	GCGC	1 cut(s)	282
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	7 cut(s)	18, 73, 85, 202, 242, 264, 287
CviKI_1	RGCY	7 cut(s)	18, 73, 85, 202, 242, 264, 287
DinI	GGCGCC	1 cut(s)	281
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
DraIII	CACNNNGTG	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	281
EheI	GGCGCC	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	1 cut(s)	194
FaiI	YATR	2 cut(s)	192, 274
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	2 cut(s)	50, 272
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	3 cut(s)	77, 239, 284
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	2 cut(s)	126, 160
HpyCH4V	TGCA	2 cut(s)	143, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	1 cut(s)	280
KasI	GGCGCC	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	5 cut(s)	162, 165, 200, 204, 262
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	3 cut(s)	77, 239, 284
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	2 cut(s)	61, 301
Mly113I	GGCGCC	1 cut(s)	280
MnlI	CCTC	3 cut(s)	145, 275, 298
MseI	TTAA	3 cut(s)	90, 173, 198
MspI	CCGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	82
NarI	GGCGCC	1 cut(s)	280
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	75
PluTI	GGCGCC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	90, 173, 198
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	134
SetI	ASST	6 cut(s)	20, 75, 87, 172, 204, 244
SfaNI	GCATC	1 cut(s)	28
SfoI	GGCGCC	1 cut(s)	281
Sse9I	AATT	2 cut(s)	61, 301
SspDI	GGCGCC	1 cut(s)	279
SspMI	CTAG	3 cut(s)	77, 239, 284
TaaI	ACNGT	2 cut(s)	126, 160
TasI	AATT	2 cut(s)	61, 301
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	90, 173, 198
Tru9I	TTAA	3 cut(s)	90, 173, 198
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	73
TspRI	CASTG	1 cut(s)	129
XspI	CTAG	3 cut(s)	77, 239, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.