Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

16475915 .. 16478143

Gene Structure 2229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G107200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAGAAGAAGGCAAACAAGAGCAGAAGATCATCCTCAAAAGCCCTGCTCTTCTAAAGTACATCCTCGACACAAGCTGCTACCCAAGGGAACATGAGCAGTTGAAACAACTAAGGGAAGCCACTGTCGAGAAATACAAGTACTGGAGCATTATGAATGTGCCTGTTGATGAAGGGCTGCTGATCTCCATGCTTCTGAAGATCATGAATGCAAAGAAGACATTAGAGCTCGGAGTATTTACTGGCTATTCTCTTCTTACTACTGCTCTTGCACTGCCTCATGATGGAAAAATTATAGCAATCGATCCAGATAACGAAGCCTACGAGTTTGGATTGCCGTTCATTCGGAAGGCTGGGGTGGACCACAAAATTAATTTCTTTCACACGGATGCCCTCTCAGTCCTAAATGATCTCATTACTAATGGGAAGGAAGAAGGGAGCTTCGATTATGCATTTGTGGATGCTAACAAGGACAACTACATAGAATATCATGAGCTGATGCTGAAGCTTGTTAAAGTTGGCGGAATAATAGCATACGACAACACATTGTTGTTTGGCTCAGTGACAGAGCCCGAGGAGACGGTGGAGGAAACGTTAAGGCTACCCAGAAAACACACGAGGGATTTGAACAGCTTTCTAGCCACTGACTCCCGTATCGAACTGGCTCATGTTACCACCGGTGATGGCCTCGCCCTCTGCCGGCGCCTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

238

Amino Acids

26.85

Weight (kDa)

5.25

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	702
AciI	CCGC	1 cut(s)	522
AclI	AACGTT	1 cut(s)	593
AclWI	GGATC	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	218, 524
AcyI	GRCGYC	1 cut(s)	703
AfaI	GTAC	2 cut(s)	62, 143
AfiI	CCNNNNNNNGG	2 cut(s)	284, 699
AgeI	ACCGGT	1 cut(s)	677
AgsI	TTSAA	2 cut(s)	106, 628
AluBI	AGCT	6 cut(s)	78, 229, 441, 496, 508, 633
AluI	AGCT	6 cut(s)	78, 229, 441, 496, 508, 633
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	2 cut(s)	572, 707
AoxI	GGCC	1 cut(s)	685
ApeKI	GCWGC	2 cut(s)	78, 178
AseI	ATTAAT	1 cut(s)	372
AsiGI	ACCGGT	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	692
AvaI	CYCGRG	2 cut(s)	572, 707
AvaII	GGWCC	1 cut(s)	361
BaeI	ACNNNNGTAYC	2 cut(s)	637, 670
BanI	GGYRCC	1 cut(s)	702
BanII	GRGCYC	2 cut(s)	231, 573
BauI	CACGAG	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	65, 165
BccI	CCATC	2 cut(s)	278, 677
BceAI	ACGGC	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	638
BfoI	RGCGCY	1 cut(s)	706
BisI	GCNGC	2 cut(s)	79, 179
BlsI	GCNGC	2 cut(s)	80, 180
BmcAI	AGTACT	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	2 cut(s)	572, 707
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	704
BmsI	GCATC	3 cut(s)	379, 451, 489
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	703
BsaJI	CCNNGG	2 cut(s)	86, 573
BsaWI	WCCGGW	1 cut(s)	677
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 699
Bse118I	RCCGGY	2 cut(s)	677, 699
Bse1I	ACTGG	3 cut(s)	149, 247, 666
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	86, 573
BseGI	GGATG	4 cut(s)	33, 63, 394, 466
BseLI	CCNNNNNNNGG	2 cut(s)	284, 699
BseMII	CTCAG	2 cut(s)	411, 573
BseNI	ACTGG	3 cut(s)	149, 247, 666
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	65, 165
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	687
BshNI	GGYRCC	1 cut(s)	702
BshTI	ACCGGT	1 cut(s)	677
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	2 cut(s)	572, 707
BsiSI	CCGG	2 cut(s)	678, 700
BslI	CCNNNNNNNGG	2 cut(s)	284, 699
BsmAI	GTCTC	1 cut(s)	572
BsmBI	CGTCTC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	687
BsoBI	CYCGRG	2 cut(s)	572, 707
Bsp1286I	GDGCHC	2 cut(s)	231, 573
Bsp143I	GATC	5 cut(s)	30, 183, 201, 304, 409
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	1 cut(s)	687
BspCNI	CTCAG	2 cut(s)	410, 572
BspDI	ATCGAT	1 cut(s)	303
BspHI	TCATGA	3 cut(s)	204, 280, 490
BspLI	GGNNCC	1 cut(s)	704
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	702
BsrFI	RCCGGY	2 cut(s)	677, 699
BsrI	ACTGG	3 cut(s)	149, 247, 666
BssAI	RCCGGY	2 cut(s)	677, 699
BssECI	CCNNGG	2 cut(s)	86, 573
BssMI	GATC	5 cut(s)	30, 183, 201, 304, 409
BssNI	GRCGYC	1 cut(s)	703
BssSI	CACGAG	1 cut(s)	616
BssT1I	CCWWGG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	616
Bst4CI	ACNGT	2 cut(s)	127, 583
Bst6I	CTCTTC	2 cut(s)	57, 258
BstACI	GRCGYC	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	701
BstDEI	CTNAG	3 cut(s)	113, 397, 559
BstF5I	GGATG	4 cut(s)	33, 63, 394, 466
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	5 cut(s)	33, 186, 204, 307, 412
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	5 cut(s)	30, 183, 201, 304, 409
BstV1I	GCAGC	2 cut(s)	65, 165
BstV2I	GAAGAC	1 cut(s)	224
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	687
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	4 cut(s)	33, 63, 394, 466
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	4 cut(s)	123, 272, 567, 642
Cac8I	GCNNGC	1 cut(s)	701
CciI	TCATGA	3 cut(s)	204, 280, 490
CfoI	GCGC	1 cut(s)	705
Cfr10I	RCCGGY	2 cut(s)	677, 699
Cfr13I	GGNCC	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	61, 142
CspAI	ACCGGT	1 cut(s)	677
CviAII	CATG	6 cut(s)	95, 190, 205, 281, 491, 668
CviQI	GTAC	2 cut(s)	61, 142
DdeI	CTNAG	3 cut(s)	113, 397, 559
DinI	GGCGCC	1 cut(s)	704
DpnI	GATC	5 cut(s)	32, 185, 203, 306, 411
DpnII	GATC	5 cut(s)	30, 183, 201, 304, 409
Eam1104I	CTCTTC	2 cut(s)	57, 258
EarI	CTCTTC	2 cut(s)	57, 258
EciI	GGCGGA	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	2 cut(s)	231, 573
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	218, 524
Eco88I	CYCGRG	2 cut(s)	572, 707
EcoICRI	GAGCTC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	231, 573
EgeI	GGCGCC	1 cut(s)	704
EheI	GGCGCC	1 cut(s)	704
ErhI	CCWWGG	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	6 cut(s)	98, 193, 208, 284, 494, 671
FatI	CATG	6 cut(s)	94, 189, 204, 280, 490, 667
Fnu4HI	GCNGC	2 cut(s)	79, 179
FokI	GGATG	4 cut(s)	20, 50, 401, 473
FriOI	GRGCYC	2 cut(s)	231, 573
Fsp4HI	GCNGC	2 cut(s)	79, 179
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	2 cut(s)	79, 179
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	1 cut(s)	687
HapII	CCGG	2 cut(s)	678, 700
HhaI	GCGC	1 cut(s)	705
Hin1I	GRCGYC	1 cut(s)	703
Hin1II	CATG	6 cut(s)	98, 193, 208, 284, 494, 671
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	1 cut(s)	647
HpaII	CCGG	2 cut(s)	678, 700
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	3 cut(s)	198, 233, 348
Hpy188III	TCNNGA	5 cut(s)	130, 205, 281, 308, 491
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	5 cut(s)	5, 167, 343, 421, 428
HpyCH4III	ACNGT	2 cut(s)	127, 583
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	3 cut(s)	212, 272, 452
HpyF3I	CTNAG	3 cut(s)	113, 397, 559
HpySE526I	ACGT	1 cut(s)	593
Hsp92I	GRCGYC	1 cut(s)	703
Hsp92II	CATG	6 cut(s)	98, 193, 208, 284, 494, 671
HspAI	GCGC	1 cut(s)	703
KasI	GGCGCC	1 cut(s)	702
KroI	GCCGGC	1 cut(s)	699
KroNI	GCCGGC	1 cut(s)	701
Kzo9I	GATC	5 cut(s)	30, 183, 201, 304, 409
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	147, 438
LpnPI	CCDG	9 cut(s)	60, 130, 177, 228, 321, 339, 619, 647, 691
Lsp1109I	GCAGC	2 cut(s)	65, 165
LweI	GCATC	3 cut(s)	379, 451, 489
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	2 cut(s)	562, 670
MalI	GATC	5 cut(s)	32, 185, 203, 306, 411
MboI	GATC	5 cut(s)	30, 183, 201, 304, 409
MboII	GAAGA	7 cut(s)	20, 40, 44, 211, 229, 245, 443
MhlI	GDGCHC	2 cut(s)	231, 573
MluCI	AATT	3 cut(s)	291, 369, 373
Mly113I	GGCGCC	1 cut(s)	703
MlyI	GAGTC	1 cut(s)	641
MnlI	CCTC	9 cut(s)	47, 77, 288, 404, 568, 580, 612, 698, 704
Mph1103I	ATGCAT	1 cut(s)	454
MroNI	GCCGGC	1 cut(s)	699
MseI	TTAA	3 cut(s)	372, 513, 596
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	2 cut(s)	678, 700
Mva1269I	GAATGC	1 cut(s)	214
NaeI	GCCGGC	1 cut(s)	701
NarI	GGCGCC	1 cut(s)	703
NdeII	GATC	5 cut(s)	30, 183, 201, 304, 409
NgoMIV	GCCGGC	1 cut(s)	699
NlaIII	CATG	6 cut(s)	98, 193, 208, 284, 494, 671
NlaIV	GGNNCC	1 cut(s)	704
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	454
PaeR7I	CTCGAG	1 cut(s)	707
PagI	TCATGA	3 cut(s)	204, 280, 490
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	701
PinAI	ACCGGT	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	80, 180
PleI	GAGTC	1 cut(s)	641
PluTI	GGCGCC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	641
PshBI	ATTAAT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	1 cut(s)	361
PspXI	VCTCGAGB	1 cut(s)	707
RsaI	GTAC	2 cut(s)	62, 143
RsaNI	GTAC	2 cut(s)	61, 142
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	372, 513, 596
SatI	GCNGC	2 cut(s)	79, 179
Sau3AI	GATC	5 cut(s)	30, 183, 201, 304, 409
Sau96I	GGNCC	1 cut(s)	361
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	1 cut(s)	641
SduI	GDGCHC	2 cut(s)	231, 573
SetI	ASST	7 cut(s)	80, 231, 443, 498, 510, 596, 635
SfaNI	GCATC	3 cut(s)	379, 451, 489
SfoI	GGCGCC	1 cut(s)	704
Sfr274I	CTCGAG	1 cut(s)	707
SgrAI	CRCCGGYG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	3 cut(s)	291, 369, 373
SsiI	CCGC	1 cut(s)	522
SspDI	GGCGCC	1 cut(s)	702
SspMI	CTAG	1 cut(s)	638
SstI	GAGCTC	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	127, 583
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	6 cut(s)	69, 129, 303, 444, 657, 708
TasI	AATT	3 cut(s)	291, 369, 373
TatI	WGTACW	2 cut(s)	60, 141
Tru1I	TTAA	3 cut(s)	372, 513, 596
Tru9I	TTAA	3 cut(s)	372, 513, 596
TscAI	CASTG	4 cut(s)	130, 279, 567, 649
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	2 cut(s)	78, 178
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	4 cut(s)	170, 186, 221, 331
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	4 cut(s)	130, 279, 567, 649
VpaK11BI	GGWCC	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	372
XhoI	CTCGAG	1 cut(s)	707
XspI	CTAG	1 cut(s)	638
ZrmI	AGTACT	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.