Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

24032115 .. 24034470

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G227100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGAGACAAGGTAGAGAAGATCATCCTCAAAAGCCCGGCACTTTTAAAGTACATCTTCGAAACAAGCTGCTTCCCAAGAGAACACGAGCAATTGAAGCAACTAAGGGAAGCCACTGTCGAGAAATACCAATTTTGGAGTCTCATGAATGTGCCTGTAGATGAAGGCCTGCTTCTCTCGATGATTCTAAAGCTCATGAATGCAAACAAGACACTGGAACTTGGTGTATTCACTGGCTACTCTCTTCTTACAACTGCTCTTGCAATACCTCATGACGGCAAAATAACGGCAATCGATCCAGATAAAGAAGCCTATGAGTTTGGATTGCCATACATTCAGAGGGCTGGGGTGGATCATAAGATTAATTTCTGTCACTCAGATGCCCTCACTGTCCTAAATGATCTCATTGCCAATGGGAAGGAAGAAGGGAGCTTTGATTTTGCATTTGTGGACGCGAACAAGGACGCATACATCAAATATCACGAGCTGCTGCTAAAGCTTGTGAAGGTCGGAGGAATAATAGCTTATGACAACACATTGTGGTTTGGGACAGTGGTAGAAGCTGAGGAGAATGTGGAGGAATTCGCAAAGAAAGGCAGAAAGCATTTGCTGCAACTCAACAGCTTTCTTGCCGCCGACGATCGCATCGAGTTAGCTCTTGTTTCCATCGGAGATGGACTCACCCTCTGCAGGCGTCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

235

Amino Acids

26.39

Weight (kDa)

5.31

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	455
AciI	CCGC	1 cut(s)	633
AclWI	GGATC	2 cut(s)	290, 360
AcsI	RAATTY	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	694
AdeI	CACNNNGTG	1 cut(s)	540
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	275, 690
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	9 cut(s)	69, 193, 432, 487, 499, 524, 563, 624, 656
AluI	AGCT	9 cut(s)	69, 193, 432, 487, 499, 524, 563, 624, 656
Alw26I	GTCTC	2 cut(s)	146, 701
AlwI	GGATC	2 cut(s)	290, 360
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	4 cut(s)	69, 487, 490, 610
ApoI	RAATTY	1 cut(s)	581
AseI	ATTAAT	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	673
AsuII	TTCGAA	1 cut(s)	60
BauI	CACGAG	2 cut(s)	86, 482
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	56, 474, 477, 597
BccI	CCATC	2 cut(s)	668, 674
BceAI	ACGGC	2 cut(s)	292, 303
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	146, 701
BfmI	CTRYAG	2 cut(s)	156, 688
BisI	GCNGC	5 cut(s)	70, 488, 491, 611, 633
BlsI	GCNGC	5 cut(s)	71, 489, 492, 612, 634
Bme1390I	CCNGG	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	2 cut(s)	370, 654
BplI	GAGNNNNNCTC	2 cut(s)	663, 695
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	694
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 690
Bse1I	ACTGG	2 cut(s)	219, 238
Bse3DI	GCAATG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	294
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	275, 690
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	390, 555
BseNI	ACTGG	2 cut(s)	219, 238
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	4 cut(s)	56, 474, 477, 597
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	455
Bsh1285I	CGRYCG	1 cut(s)	643
BshFI	GGCC	1 cut(s)	168
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	643
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	2 cut(s)	275, 690
BsmAI	GTCTC	2 cut(s)	146, 701
BsmBI	CGTCTC	1 cut(s)	701
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	21, 295, 352, 400, 640
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	389, 556
BspDI	ATCGAT	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	455
BspHI	TCATGA	3 cut(s)	144, 195, 271
BspMAI	CTGCAG	1 cut(s)	692
BspPI	GGATC	2 cut(s)	290, 360
BspT104I	TTCGAA	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	219, 238
BssMI	GATC	5 cut(s)	21, 295, 352, 400, 640
BssNI	GRCGYC	1 cut(s)	694
BssSI	CACGAG	2 cut(s)	86, 482
Bst2BI	CACGAG	2 cut(s)	86, 482
Bst4CI	ACNGT	3 cut(s)	118, 391, 553
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	694
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	170, 692
BstDEI	CTNAG	3 cut(s)	104, 376, 564
BstF5I	GGATG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	455
BstKTI	GATC	5 cut(s)	24, 298, 355, 403, 643
BstMAI	GTCTC	2 cut(s)	146, 701
BstMBI	GATC	5 cut(s)	21, 295, 352, 400, 640
BstMCI	CGRYCG	1 cut(s)	643
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 496, 610
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	2 cut(s)	156, 688
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	56, 474, 477, 597
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	5 cut(s)	114, 212, 231, 387, 558
Cac8I	GCNNGC	2 cut(s)	170, 692
CciI	TCATGA	3 cut(s)	144, 195, 271
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	3 cut(s)	461, 473, 683
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	145, 196, 272
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	104, 376, 564
DpnI	GATC	5 cut(s)	23, 297, 354, 402, 642
DpnII	GATC	5 cut(s)	21, 295, 352, 400, 640
DraI	TTTAAA	1 cut(s)	48
DraIII	CACNNNGTG	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	581
Esp3I	CGTCTC	1 cut(s)	701
FaeI	CATG	3 cut(s)	148, 199, 275
FaiI	YATR	8 cut(s)	146, 197, 273, 315, 331, 357, 469, 528
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 156, 188
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	3 cut(s)	144, 195, 271
Fnu4HI	GCNGC	5 cut(s)	70, 488, 491, 611, 633
FokI	GGATG	1 cut(s)	11
Fsp4HI	GCNGC	5 cut(s)	70, 488, 491, 611, 633
GluI	GCNGC	5 cut(s)	70, 488, 491, 611, 633
GsaI	CCCAGC	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	3 cut(s)	461, 473, 683
Hin1I	GRCGYC	1 cut(s)	694
Hin1II	CATG	3 cut(s)	148, 199, 275
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	3 cut(s)	139, 184, 678
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	4 cut(s)	339, 379, 512, 671
Hpy188III	TCNNGA	7 cut(s)	121, 145, 178, 196, 272, 299, 482
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	4 cut(s)	158, 412, 419, 499
HpyCH4III	ACNGT	3 cut(s)	118, 391, 553
HpyCH4V	TGCA	5 cut(s)	203, 263, 443, 613, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 496, 610
HpyF3I	CTNAG	3 cut(s)	104, 376, 564
Hsp92I	GRCGYC	1 cut(s)	694
Hsp92II	CATG	3 cut(s)	148, 199, 275
Kzo9I	GATC	5 cut(s)	21, 295, 352, 400, 640
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	8 cut(s)	51, 168, 182, 200, 219, 312, 330, 676
Lsp1109I	GCAGC	4 cut(s)	56, 474, 477, 597
LweI	GCATC	2 cut(s)	370, 654
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	5 cut(s)	23, 297, 354, 402, 642
MboI	GATC	5 cut(s)	21, 295, 352, 400, 640
MboII	GAAGA	4 cut(s)	31, 49, 236, 434
MfeI	CAATTG	1 cut(s)	92
MluCI	AATT	4 cut(s)	92, 131, 364, 581
MlyI	GAGTC	2 cut(s)	148, 672
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	8 cut(s)	38, 279, 333, 395, 506, 559, 571, 695
MseI	TTAA	2 cut(s)	47, 363
MslI	CAYNNNNRTG	2 cut(s)	149, 378
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	205
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	97, 496, 610
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	5 cut(s)	21, 295, 352, 400, 640
NlaIII	CATG	3 cut(s)	148, 199, 275
NmuCI	GTSAC	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	60
PagI	TCATGA	3 cut(s)	144, 195, 271
PceI	AGGCCT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	5 cut(s)	71, 489, 492, 612, 634
Ple19I	CGATCG	1 cut(s)	643
PleI	GAGTC	2 cut(s)	147, 672
PpsI	GAGTC	2 cut(s)	147, 672
PshBI	ATTAAT	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	692
PvuI	CGATCG	1 cut(s)	643
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	149, 378
SaqAI	TTAA	2 cut(s)	47, 363
SatI	GCNGC	5 cut(s)	70, 488, 491, 611, 633
Sau3AI	GATC	5 cut(s)	21, 295, 352, 400, 640
SchI	GAGTC	2 cut(s)	148, 672
ScrFI	CCNGG	1 cut(s)	38
SfaNI	GCATC	2 cut(s)	370, 654
SfcI	CTRYAG	2 cut(s)	156, 688
SfuI	TTCGAA	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	149, 378
Sse9I	AATT	4 cut(s)	92, 131, 364, 581
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	633
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	118, 391, 553
TaqI	TCGA	5 cut(s)	60, 120, 179, 294, 648
TasI	AATT	4 cut(s)	92, 131, 364, 581
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	47, 363
Tru9I	TTAA	2 cut(s)	47, 363
TscAI	CASTG	5 cut(s)	121, 219, 238, 394, 558
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	4 cut(s)	69, 487, 490, 610
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	3 cut(s)	161, 177, 212
TspRI	CASTG	5 cut(s)	121, 219, 238, 394, 558
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.