Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

8626272 .. 8629143

Gene Structure 2872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1117900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCTGAGTCAGAAGCCAAACCAGAGAGGAGAATACTAAAAAACCCAGCACTTCTCAAGTACATCTTCGAAACAAGCTGTTTTCCAAGAGAACATGAGCAACTGAAGCAACTAAGGGAGGCCACTGTCGAGAAATATCCCTTCTGGAGTCTTATGAATGTGCCCGTCGACGAAAGCCTGCTTCTCTCGATGCTTCTGAAGGTGATGAATGCGAAGAAGACGTTGGAGCTTGGTGTCTTCACTGGTTATTCTCTTCTCACTACTGCTCTTGCACTACCTGCTGATGGCAAAATAACGGCAATCGATGTAGATAAAGAAGCCTATGAGGTTGGATTGCCATTTATTCAAAAGGCTGGGGTGGAAAATAAGATTAACTTCTGCCAGTCAGATGCCTTCACAGTTCTAAATGATCTCATTACCAAAGGAAAGGAAGAAGGGAGCTTTGATTTCGCATTTGTGGATGCCGACAAGGACTCCTACATGGAATATCACAAGTTGCTGATGAAGCTTGTGAAGGTTGGAGGAATCATAGCTTATGATAACACATTGTGGTTTGGGACAGTGGCGGAGCCTGAGGAGAATGTGGAAAATTTTGCAAAGCAAAGCAGAAAACATTTGCTGGAACTCAACAGCTTTCTCGCGGCGGATGACCGTGTCGAGCTAGCTGTTGTTTCCATCGGAGATGGACTCACCCTCTGCAGACGTCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

238

Amino Acids

26.68

Weight (kDa)

5.08

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	28 - 236	7.1e-83	O-methyltransferase
Methyltransf_24	PF13578	75 - 181	8e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	641
AciI	CCGC	3 cut(s)	566, 641, 644
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	2 cut(s)	125, 218
AcyI	GRCGYC	1 cut(s)	703
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	8 cut(s)	78, 229, 441, 508, 533, 633, 661, 665
AluI	AGCT	8 cut(s)	78, 229, 441, 508, 533, 633, 661, 665
Alw26I	GTCTC	1 cut(s)	710
AoxI	GGCC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	589
AsuHPI	GGTGA	2 cut(s)	214, 682
AsuII	TTCGAA	1 cut(s)	69
AsuNHI	GCTAGC	1 cut(s)	661
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	1 cut(s)	165
BbsI	GAAGAC	2 cut(s)	224, 229
BccI	CCATC	3 cut(s)	278, 677, 683
BceAI	ACGGC	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	697
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
BmiI	GGNNCC	1 cut(s)	570
BmsI	GCATC	3 cut(s)	180, 379, 451
BmtI	GCTAGC	1 cut(s)	665
BpiI	GAAGAC	2 cut(s)	224, 229
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
BpmI	CTGGAG	1 cut(s)	166
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	247, 382
Bse21I	CCTNAGG	1 cut(s)	573
BseCI	ATCGAT	1 cut(s)	303
BseGI	GGATG	2 cut(s)	466, 652
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	2 cut(s)	247, 382
BseRI	GAGGAG	2 cut(s)	43, 590
BseSI	GKGCMC	1 cut(s)	165
BseYI	CCCAGC	2 cut(s)	46, 353
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	710
BsmBI	CGTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	3 cut(s)	566, 641, 644
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	565
BspDI	ATCGAT	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	641
BspLI	GGNNCC	1 cut(s)	570
BspMAI	CTGCAG	1 cut(s)	701
BspMI	ACCTGC	1 cut(s)	286
BspOI	GCTAGC	1 cut(s)	665
BspT104I	TTCGAA	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	247, 382
BssMI	GATC	1 cut(s)	409
BssNI	GRCGYC	1 cut(s)	703
Bst4CI	ACNGT	4 cut(s)	127, 400, 562, 653
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	703
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	179, 663
BstDEI	CTNAG	3 cut(s)	6, 113, 573
BstF5I	GGATG	2 cut(s)	466, 652
BstFNI	CGCG	1 cut(s)	641
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 278, 505
BstSFI	CTRYAG	1 cut(s)	697
BstSLI	GKGCMC	1 cut(s)	165
BstUI	CGCG	1 cut(s)	641
BstV2I	GAAGAC	2 cut(s)	224, 229
Bsu15I	ATCGAT	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	122
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	466, 652
BtsIMutI	CAGTG	3 cut(s)	123, 240, 567
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	179, 663
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	2 cut(s)	95, 481
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	6, 113, 573
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraIII	CACNNNGTG	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	2 cut(s)	581, 659
Eco57I	CTGAAG	2 cut(s)	125, 218
Eco81I	CCTNAGG	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	710
FaeI	CATG	2 cut(s)	98, 484
FaiI	YATR	6 cut(s)	96, 155, 324, 482, 530, 537
FalI	AAGNNNNNCTT	4 cut(s)	50, 82, 359, 391
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	2 cut(s)	94, 480
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	2 cut(s)	473, 659
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	1 cut(s)	642
GsaI	CCCAGC	2 cut(s)	50, 357
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	703
Hin1II	CATG	2 cut(s)	98, 484
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	5 cut(s)	8, 148, 473, 525, 687
HphI	GGTGA	2 cut(s)	214, 682
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	5 cut(s)	7, 13, 198, 388, 680
Hpy188III	TCNNGA	3 cut(s)	130, 145, 187
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	2 cut(s)	170, 173
HpyAV	CCTTC	5 cut(s)	151, 193, 403, 428, 508
HpyCH4III	ACNGT	4 cut(s)	127, 400, 562, 653
HpyCH4IV	ACGT	2 cut(s)	221, 703
HpyCH4V	TGCA	3 cut(s)	272, 596, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 278, 505
HpyF3I	CTNAG	3 cut(s)	6, 113, 573
HpySE526I	ACGT	2 cut(s)	221, 703
Hsp92I	GRCGYC	1 cut(s)	703
Hsp92II	CATG	2 cut(s)	98, 484
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	3 cut(s)	226, 438, 568
LweI	GCATC	3 cut(s)	180, 379, 451
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	2 cut(s)	221, 703
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	6 cut(s)	58, 226, 229, 229, 245, 443
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	589
MlyI	GAGTC	4 cut(s)	17, 157, 467, 681
MmeI	TCCRAC	3 cut(s)	204, 310, 499
MnlI	CCTC	6 cut(s)	21, 112, 319, 515, 568, 704
MseI	TTAA	2 cut(s)	372, 712
Mva1269I	GAATGC	1 cut(s)	214
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	3 cut(s)	106, 278, 505
NdeII	GATC	1 cut(s)	409
NheI	GCTAGC	1 cut(s)	661
NlaIII	CATG	2 cut(s)	98, 484
NlaIV	GGNNCC	1 cut(s)	570
NspV	TTCGAA	1 cut(s)	69
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	525
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	1 cut(s)	643
PleI	GAGTC	4 cut(s)	16, 156, 467, 681
PpsI	GAGTC	4 cut(s)	16, 156, 467, 681
PspFI	CCCAGC	2 cut(s)	46, 353
PspN4I	GGNNCC	1 cut(s)	570
PstI	CTGCAG	1 cut(s)	701
PsyI	GACNNNGTC	1 cut(s)	653
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	372, 712
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	1 cut(s)	409
SchI	GAGTC	4 cut(s)	17, 157, 467, 681
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	3 cut(s)	180, 379, 451
SfcI	CTRYAG	1 cut(s)	697
SfuI	TTCGAA	1 cut(s)	69
SgrDI	CGTCGACG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	589
SsiI	CCGC	3 cut(s)	566, 641, 644
SspMI	CTAG	1 cut(s)	662
TaaI	ACNGT	4 cut(s)	127, 400, 562, 653
TaiI	ACGT	2 cut(s)	224, 706
TaqI	TCGA	6 cut(s)	69, 129, 168, 188, 303, 657
TasI	AATT	1 cut(s)	589
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	2 cut(s)	372, 712
Tru9I	TTAA	2 cut(s)	372, 712
TscAI	CASTG	3 cut(s)	130, 247, 567
TspDTI	ATGAA	3 cut(s)	170, 221, 518
TspRI	CASTG	3 cut(s)	130, 247, 567
Tth111I	GACNNNGTC	1 cut(s)	653
XapI	RAATTY	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	662
ZraI	GACGTC	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.