Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

25722298 .. 25724459

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTGATCATGGGGAAGAAGAAAAGATCATACTCAAAAGCCCAGGCCTGCTGAAGTACATCTTGGAAACAAGCTGCTTTCCAAGAGAACACGAGCTATTGAAGCAGCTAAGGGAAGCAACTGTCGAGAAATACCAGTTCTGGAGTATTATGAATGTGCCAGTTGATGAAGGATTGCTTCTCTCCGTTCTTCTGAAGATTATGAATGCAAAGAAGACATTGGAGTTGGGAGTCTTCACTGGTTATTCTCTACTCACCACTGCTCTTGCCCTACCTGCTGATGGCAAAATAACAGCAATCGATCCAAACAAAGAAGCCTATGAGGTCGGATTGCCGTTCATTCAAAAGGCCGGGGTGGAGCACAAGATCGACTTCTTTCACTCAGATGCCTTCTCAGTCCTAAACGATCTCATTACCAATGGTAAGGAGGAAGGGAGCTTCGACTTTGTATTTGTGGATGCAGACAAGGACAACTACATCAATTATCACGAACTGCTACTGAAGCTTGTCAAAGTTGGTGGGATAATAGCTTATGATAACACACTGTGGTTTGGCACGGTTGCAGAACCGGATGAGGAGAAGGTAGAGAAACCTTTAAGGCCAGGAAGAAGTCATGTGATTGAGCTCAACAAGTTTCTGGCTGGCGATTCTCGTGTTGAACTGGCTTTTGTTTCCATTGGAGATGGTCTTAGCCTATGCAGGCGCCTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

238

Amino Acids

26.62

Weight (kDa)

5.06

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	20 - 229	4.4e-84	O-methyltransferase
Methyltransf_24	PF13578	67 - 173	1.3e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	702
AclWI	GGATC	1 cut(s)	296
AcuI	CTGAAG	3 cut(s)	74, 215, 521
AcyI	GRCGYC	1 cut(s)	703
AdeI	CACNNNGTG	1 cut(s)	546
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	103, 344, 659
AjnI	CCWGG	2 cut(s)	43, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	7 cut(s)	75, 97, 109, 438, 505, 530, 625
AluI	AGCT	7 cut(s)	75, 97, 109, 438, 505, 530, 625
Alw21I	GWGCWC	2 cut(s)	363, 627
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	3 cut(s)	46, 348, 599
ApeKI	GCWGC	2 cut(s)	75, 106
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspLEI	GCGC	1 cut(s)	705
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	702
BanII	GRGCYC	1 cut(s)	627
BauI	CACGAG	2 cut(s)	92, 651
BbsI	GAAGAC	2 cut(s)	221, 226
Bbv12I	GWGCWC	2 cut(s)	363, 627
BbvI	GCAGC	2 cut(s)	62, 118
BccI	CCATC	2 cut(s)	275, 677
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	2 cut(s)	45, 603
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	76, 107
BlsI	GCNGC	2 cut(s)	77, 108
Bme1390I	CCNGG	3 cut(s)	45, 352, 603
BmiI	GGNNCC	1 cut(s)	704
BmrFI	CCNGG	3 cut(s)	45, 352, 603
BmsI	GCATC	2 cut(s)	376, 448
BpiI	GAAGAC	2 cut(s)	221, 226
BpmI	CTGGAG	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	352
Bsa29I	ATCGAT	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	703
BsaJI	CCNNGG	2 cut(s)	43, 351
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	4 cut(s)	136, 161, 244, 666
BseBI	CCWGG	2 cut(s)	45, 603
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	43, 351
BseGI	GGATG	2 cut(s)	463, 577
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	396, 408
BseNI	ACTGG	4 cut(s)	136, 161, 244, 666
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	62, 118
BshFI	GGCC	3 cut(s)	48, 350, 601
BshNI	GGYRCC	1 cut(s)	702
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	363, 627
BsiSI	CCGG	2 cut(s)	351, 569
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	48, 350, 601
Bsp1286I	GDGCHC	2 cut(s)	363, 627
Bsp143I	GATC	5 cut(s)	7, 27, 301, 366, 406
BspANI	GGCC	3 cut(s)	48, 350, 601
BspCNI	CTCAG	2 cut(s)	395, 407
BspDI	ATCGAT	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	704
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	702
BsrI	ACTGG	4 cut(s)	136, 161, 244, 666
BssECI	CCNNGG	2 cut(s)	43, 351
BssMI	GATC	5 cut(s)	7, 27, 301, 366, 406
BssNI	GRCGYC	1 cut(s)	703
BssSI	CACGAG	2 cut(s)	92, 651
Bst2BI	CACGAG	2 cut(s)	92, 651
Bst2UI	CCWGG	2 cut(s)	45, 603
Bst4CI	ACNGT	3 cut(s)	124, 546, 559
BstACI	GRCGYC	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	50, 643, 701
BstDEI	CTNAG	4 cut(s)	110, 382, 394, 689
BstF5I	GGATG	2 cut(s)	463, 577
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	5 cut(s)	10, 30, 304, 369, 409
BstMBI	GATC	5 cut(s)	7, 27, 301, 366, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 275, 502
BstNI	CCWGG	2 cut(s)	45, 603
BstSCI	CCNGG	3 cut(s)	43, 350, 601
BstV1I	GCAGC	2 cut(s)	62, 118
BstV2I	GAAGAC	2 cut(s)	221, 226
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	48, 350, 601
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	463, 577
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	237, 258, 542
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	50, 643, 701
CfoI	GCGC	1 cut(s)	705
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	58
CspCI	CAANNNNNGTGG	4 cut(s)	247, 282, 499, 534
CviAII	CATG	2 cut(s)	11, 614
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	4 cut(s)	110, 382, 394, 689
DinI	GGCGCC	1 cut(s)	704
DpnI	GATC	5 cut(s)	9, 29, 303, 368, 408
DpnII	GATC	5 cut(s)	7, 27, 301, 366, 406
DraIII	CACNNNGTG	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	625
Eco147I	AGGCCT	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	3 cut(s)	74, 215, 521
EcoICRI	GAGCTC	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	43, 601
EcoT38I	GRGCYC	1 cut(s)	627
EgeI	GGCGCC	1 cut(s)	704
EheI	GGCGCC	1 cut(s)	704
FaeI	CATG	2 cut(s)	14, 617
FaiI	YATR	8 cut(s)	12, 32, 152, 203, 321, 534, 615, 697
FalI	AAGNNNNNCTT	6 cut(s)	47, 79, 162, 194, 356, 388
FatI	CATG	2 cut(s)	10, 613
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	76, 107
FokI	GGATG	2 cut(s)	470, 584
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	2 cut(s)	76, 107
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	2 cut(s)	76, 107
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	3 cut(s)	48, 350, 601
HapII	CCGG	2 cut(s)	351, 569
HhaI	GCGC	1 cut(s)	705
Hin1I	GRCGYC	1 cut(s)	703
Hin1II	CATG	2 cut(s)	14, 617
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	231, 647
HpaII	CCGG	2 cut(s)	351, 569
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	195, 329, 385
Hpy188III	TCNNGA	3 cut(s)	127, 142, 488
HpyAV	CCTTC	4 cut(s)	164, 400, 425, 574
HpyCH4III	ACNGT	3 cut(s)	124, 546, 559
HpyCH4V	TGCA	4 cut(s)	209, 461, 563, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 275, 502
HpyF3I	CTNAG	4 cut(s)	110, 382, 394, 689
Hsp92I	GRCGYC	1 cut(s)	703
Hsp92II	CATG	2 cut(s)	14, 617
HspAI	GCGC	1 cut(s)	703
KasI	GGCGCC	1 cut(s)	702
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	7, 27, 301, 366, 406
LmnI	GCTCC	2 cut(s)	358, 435
Lsp1109I	GCAGC	2 cut(s)	62, 118
LweI	GCATC	2 cut(s)	376, 448
MalI	GATC	5 cut(s)	9, 29, 303, 368, 408
MboI	GATC	5 cut(s)	7, 27, 301, 366, 406
MboII	GAAGA	7 cut(s)	29, 32, 182, 208, 226, 226, 618
MhlI	GDGCHC	2 cut(s)	363, 627
MluCI	AATT	1 cut(s)	481
Mly113I	GGCGCC	1 cut(s)	703
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	3 cut(s)	316, 421, 568
MseI	TTAA	1 cut(s)	596
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	2 cut(s)	351, 569
MspR9I	CCNGG	3 cut(s)	45, 352, 603
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	2 cut(s)	45, 603
MwoI	GCNNNNNNNGC	3 cut(s)	103, 275, 502
NarI	GGCGCC	1 cut(s)	703
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	5 cut(s)	7, 27, 301, 366, 406
NlaIII	CATG	2 cut(s)	14, 617
NlaIV	GGNNCC	1 cut(s)	704
PceI	AGGCCT	1 cut(s)	48
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	647
PkrI	GCNGC	2 cut(s)	77, 108
PleI	GAGTC	1 cut(s)	239
PluTI	GGCGCC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	43, 601
PspGI	CCWGG	2 cut(s)	43, 601
PspN4I	GGNNCC	1 cut(s)	704
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	596
SatI	GCNGC	2 cut(s)	76, 107
Sau3AI	GATC	5 cut(s)	7, 27, 301, 366, 406
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	3 cut(s)	45, 352, 603
SduI	GDGCHC	2 cut(s)	363, 627
SfaNI	GCATC	2 cut(s)	376, 448
SfoI	GGCGCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	481
SseBI	AGGCCT	1 cut(s)	48
SspDI	GGCGCC	1 cut(s)	702
SstI	GAGCTC	1 cut(s)	627
StuI	AGGCCT	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	43, 350, 601
TaaI	ACNGT	3 cut(s)	124, 546, 559
TaqI	TCGA	4 cut(s)	126, 300, 369, 441
TasI	AATT	1 cut(s)	481
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TscAI	CASTG	3 cut(s)	244, 265, 549
TseI	GCWGC	2 cut(s)	75, 106
TspDTI	ATGAA	4 cut(s)	167, 183, 218, 328
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	3 cut(s)	244, 265, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.