Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

18105802 .. 18108736

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19990.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGATCGATCATCCTCAAAACCCCAGCGCTTCTGAAGTACATCCTTGAAACAAGCTGCTACCCAAGAGAGCACGAGCAGTTGAAGCAATTAAGGGAAGCCACTGTCGAGAAATACCAGTTCTGGAGTATAATGAATGCGCCTGTTGATGAAGGACTTTTCCTCTCAATGCTTCTAAAACTCATGAATGCAAAGAAGACACTGGAACTCGGAGTTTTTACTGGCTATTCTCTTCTCACAACTGCTCTTGCACTGCCCCTTGATGGCAAAATTACAGCAATCGATCCAAATAAAGAAGCTTACGAGTTTGGATTGCCGTTCATTCAGAAGGCTGGAGTGAATCATAAGATTAAATTCTTCCACTCGGATGCCTTCTCAGTCCTAAATGATCTCATTTCCAGTGGGGAGGAAGACGGGAGCTTTGATTTTGCATTTGTGGATGCTAACAAGGAAAAGTACATGGAATATCATGAGCTACTGTTAAAGCTTGTTAAGGTTGGTGGAATGATCGCGTACGATAACACGTTATGGTTCGGCTCAGTGGTGGAGCCGGAGGAGAAACTAGATGAACAAGCTAGACCAAACAGAAAACATATCTTGGAGTTGAACAGCTTTCTAGCTGCTGATTCTCGTATCGAATTGGCTCATCTTTCCGTTGGGGATGGACTCACCCTCTGCAGGCGCCTCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

231

Amino Acids

26.13

Weight (kDa)

5.74

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	681
AccII	CGCG	1 cut(s)	512
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	682
AfaI	GTAC	3 cut(s)	41, 458, 515
AfeI	AGCGCT	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	263, 678
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	3 cut(s)	50, 85, 607
AluBI	AGCT	8 cut(s)	57, 299, 420, 475, 487, 575, 612, 620
AluI	AGCT	8 cut(s)	57, 299, 420, 475, 487, 575, 612, 620
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	278
Aor51HI	AGCGCT	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	57, 620
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	3 cut(s)	31, 142, 684
AsuHPI	GGTGA	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	681
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	2 cut(s)	203, 417
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	44, 607
BccI	CCATC	2 cut(s)	257, 656
BceAI	ACGGC	1 cut(s)	301
BfaI	CTAG	3 cut(s)	563, 576, 617
BfmI	CTRYAG	1 cut(s)	676
BfoI	RGCGCY	2 cut(s)	32, 685
BisI	GCNGC	2 cut(s)	58, 621
BlsI	GCNGC	2 cut(s)	59, 622
BmiI	GGNNCC	2 cut(s)	549, 683
BmsI	GCATC	2 cut(s)	358, 430
BpiI	GAAGAC	2 cut(s)	203, 417
BpmI	CTGGAG	2 cut(s)	145, 354
Bsa29I	ATCGAT	2 cut(s)	8, 282
BsaHI	GRCGYC	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 678
Bse1I	ACTGG	4 cut(s)	118, 207, 226, 399
BseCI	ATCGAT	2 cut(s)	8, 282
BseGI	GGATG	5 cut(s)	12, 42, 373, 445, 667
BseLI	CCNNNNNNNGG	2 cut(s)	263, 678
BseMII	CTCAG	2 cut(s)	390, 552
BseNI	ACTGG	4 cut(s)	118, 207, 226, 399
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	44, 607
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	512
BshNI	GGYRCC	1 cut(s)	681
BshVI	ATCGAT	2 cut(s)	8, 282
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	551
BsiWI	CGTACG	1 cut(s)	513
BslI	CCNNNNNNNGG	2 cut(s)	263, 678
BsmI	GAATGC	2 cut(s)	142, 193
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	5 cut(s)	5, 9, 283, 388, 507
BspCNI	CTCAG	2 cut(s)	389, 551
BspDI	ATCGAT	2 cut(s)	8, 282
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	2 cut(s)	183, 469
BspLI	GGNNCC	2 cut(s)	549, 683
BspMAI	CTGCAG	1 cut(s)	680
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	681
BsrI	ACTGG	4 cut(s)	118, 207, 226, 399
BssMI	GATC	5 cut(s)	5, 9, 283, 388, 507
BssNI	GRCGYC	1 cut(s)	682
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	106, 480
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	2 cut(s)	376, 538
BstF5I	GGATG	5 cut(s)	12, 42, 373, 445, 667
BstFNI	CGCG	1 cut(s)	512
BstH2I	RGCGCY	2 cut(s)	32, 685
BstHHI	GCGC	3 cut(s)	31, 142, 684
BstKTI	GATC	5 cut(s)	8, 12, 286, 391, 510
BstMBI	GATC	5 cut(s)	5, 9, 283, 388, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	676
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	44, 607
BstV2I	GAAGAC	2 cut(s)	203, 417
Bsu15I	ATCGAT	2 cut(s)	8, 282
BsuTUI	ATCGAT	2 cut(s)	8, 282
BtsCI	GGATG	5 cut(s)	12, 42, 373, 445, 667
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	5 cut(s)	102, 200, 251, 406, 546
Cac8I	GCNNGC	1 cut(s)	680
CciI	TCATGA	2 cut(s)	183, 469
CfoI	GCGC	3 cut(s)	31, 142, 684
ClaI	ATCGAT	2 cut(s)	8, 282
Csp6I	GTAC	3 cut(s)	40, 457, 514
CviAII	CATG	3 cut(s)	184, 460, 470
CviQI	GTAC	3 cut(s)	40, 457, 514
DdeI	CTNAG	2 cut(s)	376, 538
DinI	GGCGCC	1 cut(s)	683
DpnI	GATC	5 cut(s)	7, 11, 285, 390, 509
DpnII	GATC	5 cut(s)	5, 9, 283, 388, 507
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	56
EgeI	GGCGCC	1 cut(s)	683
EheI	GGCGCC	1 cut(s)	683
FaeI	CATG	3 cut(s)	187, 463, 473
FaiI	YATR	7 cut(s)	131, 185, 345, 461, 471, 529, 594
FatI	CATG	3 cut(s)	183, 459, 469
Fnu4HI	GCNGC	2 cut(s)	58, 621
FokI	GGATG	4 cut(s)	29, 380, 452, 674
Fsp4HI	GCNGC	2 cut(s)	58, 621
FspBI	CTAG	3 cut(s)	563, 576, 617
GlaI	GCGC	3 cut(s)	30, 141, 683
GluI	GCNGC	2 cut(s)	58, 621
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	2 cut(s)	145, 354
HaeII	RGCGCY	2 cut(s)	32, 685
HapII	CCGG	1 cut(s)	551
HhaI	GCGC	3 cut(s)	31, 142, 684
Hin1I	GRCGYC	1 cut(s)	682
Hin1II	CATG	3 cut(s)	187, 463, 473
Hin6I	GCGC	3 cut(s)	29, 140, 682
HinP1I	GCGC	3 cut(s)	29, 140, 682
HindIII	AAGCTT	2 cut(s)	297, 485
HinfI	GANTC	3 cut(s)	340, 626, 666
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	1 cut(s)	661
Hpy188I	TCNGA	4 cut(s)	36, 212, 327, 367
Hpy188III	TCNNGA	4 cut(s)	109, 124, 184, 470
HpyAV	CCTTC	3 cut(s)	146, 322, 382
HpyCH4III	ACNGT	2 cut(s)	106, 480
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	4 cut(s)	191, 251, 431, 678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	376, 538
HpySE526I	ACGT	1 cut(s)	524
Hsp92I	GRCGYC	1 cut(s)	682
Hsp92II	CATG	3 cut(s)	187, 463, 473
HspAI	GCGC	3 cut(s)	29, 140, 682
KasI	GGCGCC	1 cut(s)	681
Kzo9I	GATC	5 cut(s)	5, 9, 283, 388, 507
LmnI	GCTCC	2 cut(s)	417, 547
Lsp1109I	GCAGC	2 cut(s)	44, 607
LweI	GCATC	2 cut(s)	358, 430
MaeI	CTAG	3 cut(s)	563, 576, 617
MaeII	ACGT	1 cut(s)	524
MalI	GATC	5 cut(s)	7, 11, 285, 390, 509
MboI	GATC	5 cut(s)	5, 9, 283, 388, 507
MboII	GAAGA	4 cut(s)	208, 224, 349, 422
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	4 cut(s)	89, 270, 353, 638
Mly113I	GGCGCC	1 cut(s)	682
MlyI	GAGTC	1 cut(s)	660
MnlI	CCTC	5 cut(s)	26, 173, 400, 547, 683
MseI	TTAA	4 cut(s)	92, 351, 482, 492
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	551
Mva1269I	GAATGC	2 cut(s)	142, 193
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	85
NarI	GGCGCC	1 cut(s)	682
NdeII	GATC	5 cut(s)	5, 9, 283, 388, 507
NlaIII	CATG	3 cut(s)	187, 463, 473
NlaIV	GGNNCC	2 cut(s)	549, 683
PagI	TCATGA	2 cut(s)	183, 469
PctI	GAATGC	2 cut(s)	142, 193
PfeI	GAWTC	2 cut(s)	340, 626
Pfl23II	CGTACG	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	59, 622
PleI	GAGTC	1 cut(s)	660
PluTI	GGCGCC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	25
PspLI	CGTACG	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	549, 683
PstI	CTGCAG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	41, 458, 515
RsaNI	GTAC	3 cut(s)	40, 457, 514
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	92, 351, 482, 492
SatI	GCNGC	2 cut(s)	58, 621
Sau3AI	GATC	5 cut(s)	5, 9, 283, 388, 507
SchI	GAGTC	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	2 cut(s)	358, 430
SfcI	CTRYAG	1 cut(s)	676
SfoI	GGCGCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	4 cut(s)	89, 270, 353, 638
SspDI	GGCGCC	1 cut(s)	681
SspMI	CTAG	3 cut(s)	563, 576, 617
TaaI	ACNGT	2 cut(s)	106, 480
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	4 cut(s)	8, 108, 282, 636
TasI	AATT	4 cut(s)	89, 270, 353, 638
TatI	WGTACW	2 cut(s)	39, 456
TfiI	GAWTC	2 cut(s)	340, 626
Tru1I	TTAA	4 cut(s)	92, 351, 482, 492
Tru9I	TTAA	4 cut(s)	92, 351, 482, 492
TscAI	CASTG	5 cut(s)	109, 207, 258, 406, 546
TseI	GCWGC	2 cut(s)	57, 620
TspDTI	ATGAA	5 cut(s)	149, 165, 200, 310, 582
TspGWI	ACGGA	2 cut(s)	643, 677
TspRI	CASTG	5 cut(s)	109, 207, 258, 406, 546
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	3 cut(s)	563, 576, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.