Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017358.1

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

236 .. 571

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017358.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgattgtgacattgtctttctcatggtttgtggatggcttgcagcatgaaaatgaaggaagttttgactttgcttttgtcgatgcggacaaggttaactattggcattaccatgagagactaatgaagctgctgaaggtgggaggtatagctgtgtatgataacactctttggggagggtcagttgtaatgcctattgagtcgactccagaacacatgaaaccaggcagacagtatactatagagctcaacaagttacttcctgctgatactcgtgtccaaatttcgcacgcttctttgggtgatgggatcacagtttgtaggcgactatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

111

Amino Acids

12.67

Weight (kDa)

5.89

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	203, 236
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	130, 152, 247
AluI	AGCT	3 cut(s)	130, 152, 247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	43, 130
ApoI	RAATTY	1 cut(s)	282
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsuHPI	GGTGA	1 cut(s)	314
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	55, 117
BccI	CCATC	2 cut(s)	29, 299
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	2 cut(s)	44, 131
BlsI	GCNGC	2 cut(s)	45, 132
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	55, 117
BsiHKAI	GWGCWC	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	309
BspACI	CCGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	317
BssMI	GATC	1 cut(s)	309
BssNAI	GTATAC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	273
Bst1107I	GTATAC	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	234, 316
BstC8I	GCNNGC	2 cut(s)	41, 291
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	55, 117
BstZ17I	GTATAC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	41, 291
CviAII	CATG	4 cut(s)	24, 47, 113, 217
CviJI	RGCY	4 cut(s)	39, 130, 152, 247
CviKI_1	RGCY	4 cut(s)	39, 130, 152, 247
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	4 cut(s)	27, 50, 116, 220
FaiI	YATR	9 cut(s)	25, 48, 114, 149, 159, 218, 237, 242, 331
FatI	CATG	4 cut(s)	23, 46, 112, 216
FblI	GTMKAC	2 cut(s)	203, 236
Fnu4HI	GCNGC	2 cut(s)	44, 131
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	44, 131
GluI	GCNGC	2 cut(s)	44, 131
GsuI	CTGGAG	1 cut(s)	192
Hin1II	CATG	4 cut(s)	27, 50, 116, 220
HincII	GTYRAC	2 cut(s)	97, 204
HindII	GTYRAC	2 cut(s)	97, 204
HinfI	GANTC	2 cut(s)	200, 205
HpaI	GTTAAC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	97, 204, 237
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	3 cut(s)	97, 204, 237
HpyAV	CCTTC	2 cut(s)	50, 130
HpyCH4III	ACNGT	2 cut(s)	234, 316
HpyCH4V	TGCA	1 cut(s)	43
Hsp92II	CATG	4 cut(s)	27, 50, 116, 220
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	309
LpnPI	CCDG	4 cut(s)	210, 222, 237, 276
Lsp1109I	GCAGC	2 cut(s)	55, 117
LweI	GCATC	1 cut(s)	73
MaeIII	GTNAC	2 cut(s)	7, 255
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	199, 209
MnlI	CCTC	2 cut(s)	137, 170
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	2 cut(s)	51, 111
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	4 cut(s)	27, 50, 116, 220
NmuCI	GTSAC	1 cut(s)	7
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	45, 132
PleI	GAGTC	2 cut(s)	199, 208
PpsI	GAGTC	2 cut(s)	199, 208
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	13
RseI	CAYNNNNRTG	2 cut(s)	51, 111
SacI	GAGCTC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	44, 131
Sau3AI	GATC	1 cut(s)	309
SchI	GAGTC	2 cut(s)	199, 209
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	6 cut(s)	96, 132, 141, 148, 154, 249
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	51, 111
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	234, 316
TaqI	TCGA	2 cut(s)	81, 203
TasI	AATT	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	43, 130
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	63, 69, 140, 233
Tth111I	GACNNNGTC	1 cut(s)	13
XapI	RAATTY	1 cut(s)	282
XmiI	GTMKAC	2 cut(s)	203, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.