Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

16478452 .. 16480777

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G107300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAGCAAGAAAACAAGAGAAGATCATTCTCAAAACCCCAGCTCTTCTAAAGTACATCCTTGAAACAAGCTGCTATCCAAGAGAACATGAGCAATTGAAGCAACTAAGGGAAGCCACTGTCGAGAAATACCAGTTCAGGAGCATTATGAATGTGCCTGTTGATGAAGGGCTGTTGCTCTCCATGCTCCTGAAGCTCATGAATGCAAAGAAGACACTGGAGCTCGGAGTATTTACTGGCTATTCTCTTCTTACTACAGCTCTTGCACTGCCTTCTGATGGAAAAATTACAGCAATCGATCTGAATAAAGAAGCCTATGAGTTCGGATTGCCGTTCATTCGGAAGGCTGGGGTGGAGCATAAGATTAACTTCTTTCAGTCGGATGCCATCTCCGTCCTAAATGATCTCATTACCAATGGGAAGGAAGAAGGGAGCTTTGATTTTGCATTTGTGGATGCTAACAAGGACACGTACATTGAATATTATGAGCTGCTGATAAAGCTTGTTAAGGTTGGTGGGATAATAGCATTCGATAACACATTGTGGTTTGGCTCAGTGGCAGAGCCTGAGGAAATGGTAGAGGAACATTTAAGGCCATCCAGAAAGCATACGAGGGAATTGAACAGCTTTCTAGCCACGGATTCCCGTATCGAATTGGCTCACGTTTCCATCGGCGATGGCCTCACCCTCTGCAGGCGCATCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

236

Amino Acids

26.76

Weight (kDa)

5.65

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	543
AfaI	GTAC	2 cut(s)	56, 473
AfiI	CCNNNNNNNGG	2 cut(s)	278, 693
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	4 cut(s)	65, 100, 479, 622
AluBI	AGCT	9 cut(s)	44, 72, 196, 223, 260, 435, 490, 502, 627
AluI	AGCT	9 cut(s)	44, 72, 196, 223, 260, 435, 490, 502, 627
Alw21I	GWGCWC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	2 cut(s)	593, 679
ApeKI	GCWGC	2 cut(s)	72, 490
AspLEI	GCGC	1 cut(s)	699
AsuHPI	GGTGA	1 cut(s)	676
AxyI	CCTNAGG	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	59, 477
BccI	CCATC	5 cut(s)	272, 395, 604, 671, 677
BceAI	ACGGC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	2 cut(s)	255, 691
BisI	GCNGC	2 cut(s)	73, 491
BlsI	GCNGC	2 cut(s)	74, 492
BmsI	GCATC	2 cut(s)	373, 445
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 693
Bse1I	ACTGG	3 cut(s)	133, 222, 241
Bse21I	CCTNAGG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	4 cut(s)	57, 388, 460, 596
BseLI	CCNNNNNNNGG	2 cut(s)	278, 693
BseMII	CTCAG	2 cut(s)	558, 567
BseNI	ACTGG	3 cut(s)	133, 222, 241
BseXI	GCAGC	2 cut(s)	59, 477
BseYI	CCCAGC	2 cut(s)	40, 347
BshFI	GGCC	2 cut(s)	595, 681
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	278, 693
BsmI	GAATGC	2 cut(s)	208, 527
BsnI	GGCC	2 cut(s)	595, 681
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	24, 298, 403
BspANI	GGCC	2 cut(s)	595, 681
BspCNI	CTCAG	2 cut(s)	559, 566
BspDI	ATCGAT	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	695
BspQI	GCTCTTC	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	133, 222, 241
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	3 cut(s)	24, 298, 403
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	51, 252
BstBAI	YACGTR	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	695
BstDEI	CTNAG	3 cut(s)	107, 553, 567
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	4 cut(s)	57, 388, 460, 596
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	3 cut(s)	27, 301, 406
BstMBI	GATC	3 cut(s)	24, 298, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 184, 193, 499
BstSFI	CTRYAG	2 cut(s)	255, 691
BstV1I	GCAGC	2 cut(s)	59, 477
BstV2I	GAAGAC	1 cut(s)	218
Bsu15I	ATCGAT	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	595, 681
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	636
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	4 cut(s)	57, 388, 460, 596
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	4 cut(s)	117, 215, 266, 561
Cac8I	GCNNGC	1 cut(s)	695
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	699
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	55, 472
CviAII	CATG	3 cut(s)	89, 184, 199
CviQI	GTAC	2 cut(s)	55, 472
DdeI	CTNAG	3 cut(s)	107, 553, 567
DpnI	GATC	3 cut(s)	26, 300, 405
DpnII	GATC	3 cut(s)	24, 298, 403
DraIII	CACNNNGTG	1 cut(s)	543
Eam1104I	CTCTTC	2 cut(s)	51, 252
EarI	CTCTTC	2 cut(s)	51, 252
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	3 cut(s)	92, 187, 202
FaiI	YATR	8 cut(s)	90, 149, 185, 200, 318, 360, 486, 609
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	3 cut(s)	88, 183, 198
Fnu4HI	GCNGC	2 cut(s)	73, 491
FokI	GGATG	4 cut(s)	44, 395, 467, 583
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	73, 491
FspBI	CTAG	1 cut(s)	632
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	2 cut(s)	73, 491
GsaI	CCCAGC	2 cut(s)	44, 351
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	595, 681
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	3 cut(s)	92, 187, 202
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	1 cut(s)	641
HphI	GGTGA	1 cut(s)	676
Hpy188I	TCNGA	6 cut(s)	227, 277, 303, 326, 342, 382
Hpy188III	TCNNGA	5 cut(s)	124, 139, 190, 199, 600
HpyAV	CCTTC	5 cut(s)	161, 282, 337, 415, 422
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	2 cut(s)	470, 663
HpyCH4V	TGCA	4 cut(s)	206, 266, 446, 693
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 184, 193, 499
HpyF3I	CTNAG	3 cut(s)	107, 553, 567
HpySE526I	ACGT	2 cut(s)	470, 663
Hsp92II	CATG	3 cut(s)	92, 187, 202
HspAI	GCGC	1 cut(s)	697
Kzo9I	GATC	3 cut(s)	24, 298, 403
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	5 cut(s)	141, 192, 220, 355, 432
Lsp1109I	GCAGC	2 cut(s)	59, 477
LweI	GCATC	2 cut(s)	373, 445
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	2 cut(s)	470, 663
MalI	GATC	3 cut(s)	26, 300, 405
MboI	GATC	3 cut(s)	24, 298, 403
MboII	GAAGA	5 cut(s)	34, 38, 223, 239, 437
MfeI	CAATTG	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	4 cut(s)	95, 285, 617, 653
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	5 cut(s)	562, 574, 606, 692, 698
MseI	TTAA	3 cut(s)	366, 507, 590
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	2 cut(s)	208, 527
MwoI	GCNNNNNNNGC	4 cut(s)	100, 184, 193, 499
NdeII	GATC	3 cut(s)	24, 298, 403
NlaIII	CATG	3 cut(s)	92, 187, 202
PagI	TCATGA	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	2 cut(s)	208, 527
PfeI	GAWTC	1 cut(s)	641
PkrI	GCNGC	2 cut(s)	74, 492
Ppu21I	YACGTR	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	225
PspFI	CCCAGC	2 cut(s)	40, 347
PstI	CTGCAG	1 cut(s)	695
PstNI	CAGNNNCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	56, 473
RsaNI	GTAC	2 cut(s)	55, 472
SacI	GAGCTC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	366, 507, 590
SatI	GCNGC	2 cut(s)	73, 491
Sau3AI	GATC	3 cut(s)	24, 298, 403
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	373, 445
SfcI	CTRYAG	2 cut(s)	255, 691
Sse9I	AATT	4 cut(s)	95, 285, 617, 653
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	1 cut(s)	632
SstI	GAGCTC	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	2 cut(s)	473, 666
TaqI	TCGA	4 cut(s)	123, 297, 531, 651
TasI	AATT	4 cut(s)	95, 285, 617, 653
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	3 cut(s)	366, 507, 590
Tru9I	TTAA	3 cut(s)	366, 507, 590
TscAI	CASTG	4 cut(s)	124, 222, 273, 561
TseI	GCWGC	2 cut(s)	72, 490
TspDTI	ATGAA	4 cut(s)	164, 180, 215, 325
TspGWI	ACGGA	2 cut(s)	382, 653
TspRI	CASTG	4 cut(s)	124, 222, 273, 561
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.