Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

48067533 .. 48068499

Gene Structure 967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG421700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAATGTGCCAGTTGATGAAGGGTTGCTTCTCTCCGTGCTTCTAAAGATCAATGCAAAGAAGACATTGGAGTTGGGAGTGTTTACTGGTTATTCTCTTCTGACCACCGCTCCTGCCCTACCGGCTGATGGCAAAATAACAGCAATCGATCCAGATAAAGAAGCCTACGAGGTTGGATTGCCGTTCATTCAAAAGGCCGGGGTGGAGCATAAGATTGACTTCTTTCACTCAGATGCCTTCTCAGTCCTAAACGATCTCATTAACAATGGCAAGGAAGAAGGGAGCTTTGACTTCGCATTTGTGGATGCTGACAAGGACAACTACATCAATTATCACGAGCTGCTAGTAAAGCTTGTTAAAGTTGGTGGGATAATAGCTTACGATAACACACTGTGGTTTGGATCGGTTGCAGAACCGGAGGAGACGGTGGCGGAACGTTTAAGGCCATACAGAAATCATGTGATTAAGCTGAACAACTTTCTGGCAGGCGATTCTCGTGTTGAACTAGCTTTTGTTTCAATCGGGGATGGCCTCACCCTATGTAGGCGCCTAGCCTCTACTGAAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

190

Amino Acids

20.93

Weight (kDa)

4.82

Isoelectric Point (pI)

21.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	1 - 184	7e-74	O-methyltransferase
Methyltransf_24	PF13578	23 - 129	4.1e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	546
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	2 cut(s)	108, 431
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	2 cut(s)	143, 409
AcyI	GRCGYC	1 cut(s)	547
AdeI	CACNNNGTG	1 cut(s)	393
AfiI	CCNNNNNNNGG	2 cut(s)	128, 543
AgsI	TTSAA	3 cut(s)	191, 503, 519
AluBI	AGCT	6 cut(s)	285, 340, 352, 377, 469, 509
AluI	AGCT	6 cut(s)	285, 340, 352, 377, 469, 509
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	143, 409
AoxI	GGCC	3 cut(s)	195, 443, 529
ApeKI	GCWGC	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspLEI	GCGC	1 cut(s)	549
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	546
BauI	CACGAG	2 cut(s)	335, 495
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	2 cut(s)	122, 521
BceAI	ACGGC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	3 cut(s)	344, 506, 551
BfoI	RGCGCY	1 cut(s)	550
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	223, 295
BpiI	GAAGAC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	199
Bsa29I	ATCGAT	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 543
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	11, 91
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	310, 532
BseLI	CCNNNNNNNGG	2 cut(s)	128, 543
BseMII	CTCAG	2 cut(s)	243, 255
BseNI	ACTGG	2 cut(s)	11, 91
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	327
BshFI	GGCC	3 cut(s)	197, 445, 531
BshNI	GGYRCC	1 cut(s)	546
BshVI	ATCGAT	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	122, 198, 416
BslI	CCNNNNNNNGG	2 cut(s)	128, 543
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	197, 445, 531
Bsp143I	GATC	4 cut(s)	48, 148, 253, 401
BspACI	CCGC	2 cut(s)	108, 431
BspANI	GGCC	3 cut(s)	197, 445, 531
BspCNI	CTCAG	2 cut(s)	242, 254
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	143, 409
BspT107I	GGYRCC	1 cut(s)	546
BsrBI	CCGCTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	11, 91
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	4 cut(s)	48, 148, 253, 401
BssNI	GRCGYC	1 cut(s)	547
BssSI	CACGAG	2 cut(s)	335, 495
Bst2BI	CACGAG	2 cut(s)	335, 495
Bst4CI	ACNGT	2 cut(s)	393, 427
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	2 cut(s)	229, 241
BstF5I	GGATG	2 cut(s)	310, 532
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	4 cut(s)	51, 151, 256, 404
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	48, 148, 253, 401
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 349
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	197, 445, 531
BsuTUI	ATCGAT	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	310, 532
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	487
CfoI	GCGC	1 cut(s)	549
Cfr10I	RCCGGY	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	147
CviAII	CATG	1 cut(s)	458
DdeI	CTNAG	2 cut(s)	229, 241
DinI	GGCGCC	1 cut(s)	548
DpnI	GATC	4 cut(s)	50, 150, 255, 403
DpnII	GATC	4 cut(s)	48, 148, 253, 401
DraIII	CACNNNGTG	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	446
EgeI	GGCGCC	1 cut(s)	548
EheI	GGCGCC	1 cut(s)	548
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	1 cut(s)	461
FaiI	YATR	4 cut(s)	210, 448, 459, 541
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 203, 235
FatI	CATG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	317, 539
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	3 cut(s)	344, 506, 551
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	3 cut(s)	197, 445, 531
HapII	CCGG	3 cut(s)	122, 198, 416
HhaI	GCGC	1 cut(s)	549
Hin1I	GRCGYC	1 cut(s)	547
Hin1II	CATG	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	491
HpaII	CCGG	3 cut(s)	122, 198, 416
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	102, 232
Hpy188III	TCNNGA	2 cut(s)	152, 335
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	3 cut(s)	14, 247, 272
HpyCH4III	ACNGT	2 cut(s)	393, 427
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	2 cut(s)	56, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 349
HpyF3I	CTNAG	2 cut(s)	229, 241
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	547
Hsp92II	CATG	1 cut(s)	461
HspAI	GCGC	1 cut(s)	547
KasI	GGCGCC	1 cut(s)	546
Kzo9I	GATC	4 cut(s)	48, 148, 253, 401
LmnI	GCTCC	3 cut(s)	115, 205, 282
LpnPI	CCDG	9 cut(s)	24, 72, 126, 135, 165, 211, 429, 467, 471
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	2 cut(s)	223, 295
MaeI	CTAG	3 cut(s)	344, 506, 551
MaeII	ACGT	1 cut(s)	436
MalI	GATC	4 cut(s)	50, 150, 255, 403
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	4 cut(s)	48, 148, 253, 401
MboII	GAAGA	3 cut(s)	73, 89, 287
MluCI	AATT	2 cut(s)	328, 568
Mly113I	GGCGCC	1 cut(s)	547
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	4 cut(s)	163, 412, 542, 565
MseI	TTAA	4 cut(s)	261, 357, 440, 465
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	3 cut(s)	122, 198, 416
MspR9I	CCNGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	122, 349
NarI	GGCGCC	1 cut(s)	547
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	48, 148, 253, 401
NlaIII	CATG	1 cut(s)	461
NlaIV	GGNNCC	1 cut(s)	548
PfeI	GAWTC	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	342
PluTI	GGCGCC	1 cut(s)	550
Psp1406I	AACGTT	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	261, 357, 440, 465
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	4 cut(s)	48, 148, 253, 401
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	8 cut(s)	174, 287, 342, 354, 379, 439, 471, 511
SfaNI	GCATC	2 cut(s)	223, 295
SfoI	GGCGCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	328, 568
SsiI	CCGC	2 cut(s)	108, 431
SspDI	GGCGCC	1 cut(s)	546
SspMI	CTAG	3 cut(s)	344, 506, 551
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	393, 427
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	328, 568
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	4 cut(s)	261, 357, 440, 465
Tru9I	TTAA	4 cut(s)	261, 357, 440, 465
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	17, 33, 175
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	396
XspI	CTAG	3 cut(s)	344, 506, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.