Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

6866772 .. 6868042

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAATGTGCCCGTCGACGAAAGCCTGCTTCTCTCGATGCTTCTGAAGGTGATGAATGCGAAGAAGACGTTGGAGCTCGGTGTCTTCACTGGTTATTCTCTTCTCACTACTGCTCTTGCACTACCTGCTGATGGCAAAATAACGGCAATCGATGTAGACAAAGAAGCCTATGAGGTTGGATTGCCATTTATTCAGAAGGCTGGGGTGGAAAATAAGATTAACTTCTGCCAGTCAGATGCCTTCACGGTCCTAAATGATCTCATTACCAAAGGAAAGGAAGAAGGGAGCTTTGATTTCGCATTTGTGGATGCCGACAAGGACTCCTACATGGAATATCACAAGTTGCTGATGAAGCTTGTGAAGGTTGGAGGAATCATAGCTTATGATAACACATTGTGGTTTGGGACAGTGGCGGAGCCTGAGGAGAATGTGGAAAATTTTGCAAAGCAAAGCAGAAAACATTTGCTGGAACTCAACAGCTTTCTCGCCGCGGATGACCGTGTCGAGCTAGCCGTTGTTTCCATCGGAGATGGACTCACCCTCTGCAGGCGTCTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

187

Amino Acids

20.53

Weight (kDa)

4.75

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AccI	GTMKAC	2 cut(s)	15, 156
AccII	CGCG	1 cut(s)	491
AciI	CCGC	3 cut(s)	413, 489, 491
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	550
AdeI	CACNNNGTG	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	131, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	76, 288, 355, 380, 480, 508
AluI	AGCT	6 cut(s)	76, 288, 355, 380, 480, 508
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	61, 529
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	247
AxyI	CCTNAGG	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	2 cut(s)	71, 76
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	3 cut(s)	125, 524, 530
BceAI	ACGGC	2 cut(s)	159, 497
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	417
BmsI	GCATC	3 cut(s)	27, 226, 298
BmtI	GCTAGC	1 cut(s)	512
BpiI	GAAGAC	2 cut(s)	71, 76
BplI	GAGNNNNNCTC	2 cut(s)	519, 551
Bsa29I	ATCGAT	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 546
Bse1I	ACTGG	2 cut(s)	94, 229
Bse21I	CCTNAGG	1 cut(s)	420
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	2 cut(s)	313, 499
BseLI	CCNNNNNNNGG	2 cut(s)	131, 546
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	94, 229
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	2 cut(s)	131, 546
BsmAI	GTCTC	1 cut(s)	557
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	12, 78
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	3 cut(s)	413, 489, 491
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	548
BspMI	ACCTGC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	94, 229
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	1 cut(s)	256
BssNI	GRCGYC	1 cut(s)	550
Bst4CI	ACNGT	3 cut(s)	247, 409, 500
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	550
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	26, 510, 548
BstDEI	CTNAG	2 cut(s)	420, 558
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	313, 499
BstFNI	CGCG	1 cut(s)	491
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 352
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	491
BstV2I	GAAGAC	2 cut(s)	71, 76
Bsu15I	ATCGAT	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	420
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	313, 499
BtsIMutI	CAGTG	2 cut(s)	87, 414
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	26, 510, 548
Cfr13I	GGNCC	1 cut(s)	247
Cfr42I	CCGCGG	1 cut(s)	492
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	539
CviAII	CATG	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	420, 558
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraIII	CACNNNGTG	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	1 cut(s)	331
FaiI	YATR	4 cut(s)	171, 329, 377, 384
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	1 cut(s)	327
FblI	GTMKAC	2 cut(s)	15, 156
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	2 cut(s)	320, 506
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	489
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	1 cut(s)	489
GsaI	CCCAGC	1 cut(s)	204
HgaI	GACGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	550
Hin1II	CATG	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	320, 372, 534
HphI	GGTGA	2 cut(s)	61, 529
Hpy166II	GTNNAC	2 cut(s)	16, 157
Hpy188I	TCNGA	4 cut(s)	45, 195, 235, 527
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	16, 157
Hpy99I	CGWCG	2 cut(s)	17, 20
HpyAV	CCTTC	5 cut(s)	40, 190, 250, 275, 355
HpyCH4III	ACNGT	3 cut(s)	247, 409, 500
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	119, 443, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 352
HpyF3I	CTNAG	2 cut(s)	420, 558
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	550
Hsp92II	CATG	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	492
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	3 cut(s)	73, 285, 415
LpnPI	CCDG	8 cut(s)	38, 75, 138, 186, 242, 432, 452, 532
LweI	GCATC	3 cut(s)	27, 226, 298
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	68
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	5 cut(s)	73, 76, 76, 92, 290
MhlI	GDGCHC	2 cut(s)	12, 78
MluCI	AATT	1 cut(s)	436
MlyI	GAGTC	2 cut(s)	314, 528
MmeI	TCCRAC	3 cut(s)	51, 157, 346
MnlI	CCTC	4 cut(s)	166, 362, 415, 551
MseI	TTAA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	61
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	125, 352
NdeII	GATC	1 cut(s)	256
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	372
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	1 cut(s)	490
PleI	GAGTC	2 cut(s)	314, 528
PpsI	GAGTC	2 cut(s)	314, 528
Psp124BI	GAGCTC	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	548
PsyI	GACNNNGTC	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	78
SacII	CCGCGG	1 cut(s)	492
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	2 cut(s)	314, 528
SduI	GDGCHC	2 cut(s)	12, 78
SfaNI	GCATC	3 cut(s)	27, 226, 298
SfcI	CTRYAG	1 cut(s)	544
Sfr303I	CCGCGG	1 cut(s)	492
SgrBI	CCGCGG	1 cut(s)	492
SgrDI	CGTCGACG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	3 cut(s)	413, 489, 491
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	78
TaaI	ACNGT	3 cut(s)	247, 409, 500
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	4 cut(s)	15, 35, 150, 504
TasI	AATT	1 cut(s)	436
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	94, 414
TspDTI	ATGAA	3 cut(s)	17, 68, 365
TspRI	CASTG	2 cut(s)	94, 414
Tth111I	GACNNNGTC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	436
XmiI	GTMKAC	2 cut(s)	15, 156
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.