Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAGTACATCTTGGAAACAAGCTGCTATCCAAGAGAACATGAGCTATTGAAGCAGCTAAGGGAAGCAACTGTCGAGAAATACCAGTACTGGAGTATTATGAATATGCCAGTTGATGAAGGGTTGCTTCTCTCCGTGCTTCTAAAGATCATGAATGCAAAGAAGACATTGGAGTTGGGAGTGTTTACTGGTTATTCTCTTCTGACCACCGCTCTTGCCCTACCGGCTGATGGCAAAATAACAGCAATCGATCCAGATAAAGAAGCCTACGAGGTTGGATTGCCGTTCATTCAAAAGGCCGGGGTGGAGCATAAGATTGACTTCTTTCACTCAGATGCCTTCTCAGTCCTAAAGGATCTCATTAACAATGGCAAGGAAGAAGGGAGCTTTGACTTCGCATTTGTGGATGCTGACAAGAAGAACTACATCAATTATCACGAGCTGCTAGTAAAGCTTGTTAAAGTTGGTGGGATAATAGCTTACGATAACACACTGTGGTTTGGATCGGTTGCAGAACCGGAGGAGACGGTGGCGGAAACTTTAAGGCCAGACAGAAATCATGTGATTAAGCTGAACGACTTTCTGGCAGGCGATTCTCGTGTTGAACTAGCTTTTGTTTCAATCGGGGATGGCCTCACCCTATGCAGGCGCCTAGCCTCTACTGAAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

224

Amino Acids

25.17

Weight (kDa)

4.94

Isoelectric Point (pI)

21.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	648
AccBSI	CCGCTC	1 cut(s)	212
AciI	CCGC	2 cut(s)	210, 533
AclWI	GGATC	3 cut(s)	245, 363, 511
AcyI	GRCGYC	1 cut(s)	649
AdeI	CACNNNGTG	1 cut(s)	495
AfaI	GTAC	2 cut(s)	8, 89
AfiI	CCNNNNNNNGG	2 cut(s)	230, 645
AgsI	TTSAA	4 cut(s)	52, 293, 605, 621
AluBI	AGCT	9 cut(s)	24, 46, 58, 387, 442, 454, 479, 571, 611
AluI	AGCT	9 cut(s)	24, 46, 58, 387, 442, 454, 479, 571, 611
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	3 cut(s)	245, 363, 511
AoxI	GGCC	3 cut(s)	297, 545, 631
ApeKI	GCWGC	3 cut(s)	24, 55, 442
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspLEI	GCGC	1 cut(s)	651
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	648
BauI	CACGAG	2 cut(s)	437, 597
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	11, 67, 429
BccI	CCATC	2 cut(s)	224, 623
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	3 cut(s)	446, 608, 653
BfoI	RGCGCY	1 cut(s)	652
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	3 cut(s)	25, 56, 443
BlsI	GCNGC	3 cut(s)	26, 57, 444
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	325, 397
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	649
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 645
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	4 cut(s)	85, 95, 110, 193
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	412, 634
BseLI	CCNNNNNNNGG	2 cut(s)	230, 645
BseMII	CTCAG	2 cut(s)	345, 357
BseNI	ACTGG	4 cut(s)	85, 95, 110, 193
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	11, 67, 429
BshFI	GGCC	3 cut(s)	299, 547, 633
BshNI	GGYRCC	1 cut(s)	648
BshVI	ATCGAT	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	224, 300, 518
BslI	CCNNNNNNNGG	2 cut(s)	230, 645
BsmAI	GTCTC	1 cut(s)	518
BsmBI	CGTCTC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	3 cut(s)	299, 547, 633
Bsp143I	GATC	4 cut(s)	147, 250, 355, 503
BspACI	CCGC	2 cut(s)	210, 533
BspANI	GGCC	3 cut(s)	299, 547, 633
BspCNI	CTCAG	2 cut(s)	344, 356
BspDI	ATCGAT	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	650
BspPI	GGATC	3 cut(s)	245, 363, 511
BspT107I	GGYRCC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	4 cut(s)	85, 95, 110, 193
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	147, 250, 355, 503
BssNI	GRCGYC	1 cut(s)	649
BssSI	CACGAG	2 cut(s)	437, 597
Bst2BI	CACGAG	2 cut(s)	437, 597
Bst4CI	ACNGT	3 cut(s)	73, 495, 529
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	589, 647
BstDEI	CTNAG	3 cut(s)	59, 331, 343
BstF5I	GGATG	2 cut(s)	412, 634
BstH2I	RGCGCY	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	4 cut(s)	150, 253, 358, 506
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	4 cut(s)	147, 250, 355, 503
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 224, 451
BstSCI	CCNGG	1 cut(s)	299
BstV1I	GCAGC	3 cut(s)	11, 67, 429
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	299, 547, 633
BsuTUI	ATCGAT	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	412, 634
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	589, 647
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	651
Cfr10I	RCCGGY	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	7, 88
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	3 cut(s)	41, 151, 560
CviQI	GTAC	2 cut(s)	7, 88
DdeI	CTNAG	3 cut(s)	59, 331, 343
DinI	GGCGCC	1 cut(s)	650
DpnI	GATC	4 cut(s)	149, 252, 357, 505
DpnII	GATC	4 cut(s)	147, 250, 355, 503
DraIII	CACNNNGTG	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	548
EgeI	GGCGCC	1 cut(s)	650
EheI	GGCGCC	1 cut(s)	650
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	3 cut(s)	44, 154, 563
FaiI	YATR	7 cut(s)	42, 101, 107, 152, 312, 561, 643
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 305, 337
FatI	CATG	3 cut(s)	40, 150, 559
Fnu4HI	GCNGC	3 cut(s)	25, 56, 443
FokI	GGATG	2 cut(s)	419, 641
Fsp4HI	GCNGC	3 cut(s)	25, 56, 443
FspBI	CTAG	3 cut(s)	446, 608, 653
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	3 cut(s)	25, 56, 443
GsuI	CTGGAG	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	652
HaeIII	GGCC	3 cut(s)	299, 547, 633
HapII	CCGG	3 cut(s)	224, 300, 518
HhaI	GCGC	1 cut(s)	651
Hin1I	GRCGYC	1 cut(s)	649
Hin1II	CATG	3 cut(s)	44, 154, 563
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	1 cut(s)	593
HpaII	CCGG	3 cut(s)	224, 300, 518
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	204, 334
Hpy188III	TCNNGA	4 cut(s)	76, 151, 254, 437
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	3 cut(s)	113, 349, 374
HpyCH4III	ACNGT	3 cut(s)	73, 495, 529
HpyCH4V	TGCA	4 cut(s)	4, 158, 512, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 224, 451
HpyF3I	CTNAG	3 cut(s)	59, 331, 343
Hsp92I	GRCGYC	1 cut(s)	649
Hsp92II	CATG	3 cut(s)	44, 154, 563
HspAI	GCGC	1 cut(s)	649
KasI	GGCGCC	1 cut(s)	648
Kzo9I	GATC	4 cut(s)	147, 250, 355, 503
LmnI	GCTCC	2 cut(s)	307, 384
Lsp1109I	GCAGC	3 cut(s)	11, 67, 429
LweI	GCATC	2 cut(s)	325, 397
MaeI	CTAG	3 cut(s)	446, 608, 653
MalI	GATC	4 cut(s)	149, 252, 357, 505
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	4 cut(s)	147, 250, 355, 503
MboII	GAAGA	4 cut(s)	175, 191, 389, 430
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	2 cut(s)	430, 670
Mly113I	GGCGCC	1 cut(s)	649
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	4 cut(s)	265, 514, 644, 667
MseI	TTAA	4 cut(s)	363, 459, 542, 567
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	3 cut(s)	224, 300, 518
MspR9I	CCNGG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	52, 224, 451
NarI	GGCGCC	1 cut(s)	649
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	4 cut(s)	147, 250, 355, 503
NlaIII	CATG	3 cut(s)	44, 154, 563
NlaIV	GGNNCC	1 cut(s)	650
PagI	TCATGA	1 cut(s)	150
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	3 cut(s)	26, 57, 444
PluTI	GGCGCC	1 cut(s)	652
PspN4I	GGNNCC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	2 cut(s)	8, 89
RsaNI	GTAC	2 cut(s)	7, 88
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	363, 459, 542, 567
SatI	GCNGC	3 cut(s)	25, 56, 443
Sau3AI	GATC	4 cut(s)	147, 250, 355, 503
ScaI	AGTACT	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	325, 397
SfoI	GGCGCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	430, 670
SsiI	CCGC	2 cut(s)	210, 533
SspDI	GGCGCC	1 cut(s)	648
SspMI	CTAG	3 cut(s)	446, 608, 653
StyD4I	CCNGG	1 cut(s)	299
TaaI	ACNGT	3 cut(s)	73, 495, 529
TaqI	TCGA	2 cut(s)	75, 249
TasI	AATT	2 cut(s)	430, 670
TatI	WGTACW	2 cut(s)	6, 87
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	4 cut(s)	363, 459, 542, 567
Tru9I	TTAA	4 cut(s)	363, 459, 542, 567
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	3 cut(s)	24, 55, 442
TspDTI	ATGAA	4 cut(s)	116, 132, 167, 277
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	498
XspI	CTAG	3 cut(s)	446, 608, 653
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.