Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

53666431 .. 53668325

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCAGCAGCTACGAAGGAAGAGAAGTTCGATCATCCGGTCTTAGAAGACAAGATCTTGCTCAAAAGCCATGCCCTTCTCAAGTACATCCTGGAAACCAGCTGCTACCCGAGAGAACACGAGCAATTGAAGCAACTTAGGGAAGACACGGTCAAGAAATATGAGTGGCGGAGTGTTATGAATGTGCCTGTTGATGAAGGTCTGCTTATCTCGATGCTTCTGAAGATCATGAATGCGAAGAAGACATTGGAGTTAGGGGTATTTACTGGTTATTCTCTTCTCACTACTGCTCTTGCACTTCCTGCTGATGGCAAAATAATAGCAATCGATCCGGATAAAGAAGCCTACGAGGTTGGATTGCCATTCATCAGAAAGGCTGGGGTGGAGCATAAGATTGACTTCTATCAATCAAATGCCTTGGTTTTCCTAGGTGATCTCATTAACCATGGAAAGAAAGAAGGCAGCTTTGATTTTGCGTTTGTGGATGCTGATAAGAACAACTACATCAGATATCATGAGCTGCTAATGAAGCTTGTCAAGGTTGGAGGAATAATAGCTTATGACAACACTCTGTGGTTTGGCTCAGTAGCAGAACCTGAGGAGGAGGTGGCTGAATCTTTCAGGGAACATGGCCGTCATGTGAAGGAACTGAACAGCTTCCTAGCCGCAGATCCCCGTATTGAATTAGTTCTTCTTTCCGTCGGAGATGGACTCACCCTCTGCAGGCGCCTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

245

Amino Acids

27.81

Weight (kDa)

5.67

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	32 - 244	2.7e-83	O-methyltransferase
Methyltransf_24	PF13578	83 - 189	4.3e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	726
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	2 cut(s)	169, 666
AclWI	GGATC	2 cut(s)	323, 665
AcoI	YGGCCR	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	727
AdeI	CACNNNGTG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	308, 723
AgsI	TTSAA	2 cut(s)	130, 683
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	7 cut(s)	11, 102, 465, 520, 532, 557, 657
AluI	AGCT	7 cut(s)	11, 102, 465, 520, 532, 557, 657
AlwI	GGATC	2 cut(s)	323, 665
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	5 cut(s)	5, 8, 102, 462, 520
Asp700I	GAANNNNTTC	2 cut(s)	656, 687
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	729
AsuHPI	GGTGA	2 cut(s)	443, 706
AvaI	CYCGRG	1 cut(s)	109
AvrII	CCTAGG	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	597
BanI	GGYRCC	1 cut(s)	726
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	3 cut(s)	54, 150, 248
BbvI	GCAGC	5 cut(s)	17, 20, 89, 474, 507
BccI	CCATC	2 cut(s)	302, 701
BceAI	ACGGC	1 cut(s)	618
BciT130I	CCWGG	1 cut(s)	92
BfaI	CTAG	2 cut(s)	428, 662
BfmI	CTRYAG	1 cut(s)	721
BfoI	RGCGCY	1 cut(s)	730
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	6 cut(s)	6, 9, 103, 463, 521, 666
BlnI	CCTAGG	1 cut(s)	427
BlsI	GCNGC	6 cut(s)	7, 10, 104, 464, 522, 667
Bme1390I	CCNGG	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	728
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	204, 475
BpiI	GAAGAC	3 cut(s)	54, 150, 248
BplI	GAGNNNNNCTC	2 cut(s)	696, 728
BpuEI	CTTGAG	1 cut(s)	65
Bsa29I	ATCGAT	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	727
BsaJI	CCNNGG	3 cut(s)	417, 427, 445
BsaWI	WCCGGW	2 cut(s)	37, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 723
Bse1I	ACTGG	1 cut(s)	271
Bse21I	CCTNAGG	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	417, 427, 445
BseGI	GGATG	3 cut(s)	34, 87, 490
BseLI	CCNNNNNNNGG	2 cut(s)	308, 723
BseMII	CTCAG	2 cut(s)	588, 597
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	2 cut(s)	614, 617
BseXI	GCAGC	5 cut(s)	17, 20, 89, 474, 507
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	633
BshNI	GGYRCC	1 cut(s)	726
BshVI	ATCGAT	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	38, 332
BslI	CCNNNNNNNGG	2 cut(s)	308, 723
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	633
BsoBI	CYCGRG	1 cut(s)	109
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	6 cut(s)	31, 54, 225, 328, 433, 670
Bsp19I	CCATGG	1 cut(s)	445
BspACI	CCGC	2 cut(s)	169, 666
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	2 cut(s)	589, 596
BspDI	ATCGAT	1 cut(s)	327
BspEI	TCCGGA	1 cut(s)	331
BspHI	TCATGA	2 cut(s)	228, 514
BspLI	GGNNCC	1 cut(s)	728
BspMAI	CTGCAG	1 cut(s)	725
BspPI	GGATC	2 cut(s)	323, 665
BspT107I	GGYRCC	1 cut(s)	726
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	417, 427, 445
BssMI	GATC	6 cut(s)	31, 54, 225, 328, 433, 670
BssNI	GRCGYC	1 cut(s)	727
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	3 cut(s)	417, 427, 445
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	15, 282
BstACI	GRCGYC	1 cut(s)	727
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	4 cut(s)	43, 137, 583, 597
BstDSI	CCRYGG	1 cut(s)	445
BstF5I	GGATG	3 cut(s)	34, 87, 490
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	6 cut(s)	34, 57, 228, 331, 436, 673
BstMBI	GATC	6 cut(s)	31, 54, 225, 328, 433, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	721
BstV1I	GCAGC	5 cut(s)	17, 20, 89, 474, 507
BstV2I	GAAGAC	3 cut(s)	54, 150, 248
BstX2I	RGATCY	2 cut(s)	54, 670
BstYI	RGATCY	2 cut(s)	54, 670
Bsu15I	ATCGAT	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	633
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	445
BtsCI	GGATG	3 cut(s)	34, 87, 490
Cac8I	GCNNGC	1 cut(s)	725
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	2 cut(s)	228, 514
CfoI	GCGC	1 cut(s)	729
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	6 cut(s)	71, 229, 446, 515, 629, 638
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	4 cut(s)	43, 137, 583, 597
DinI	GGCGCC	1 cut(s)	728
DpnI	GATC	6 cut(s)	33, 56, 227, 330, 435, 672
DpnII	GATC	6 cut(s)	31, 54, 225, 328, 433, 670
DraIII	CACNNNGTG	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	15, 282
EarI	CTCTTC	2 cut(s)	15, 282
EciI	GGCGGA	1 cut(s)	184
Eco130I	CCWWGG	3 cut(s)	417, 427, 445
Eco32I	GATATC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	242
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	512
EcoT14I	CCWWGG	3 cut(s)	417, 427, 445
EgeI	GGCGCC	1 cut(s)	728
EheI	GGCGCC	1 cut(s)	728
ErhI	CCWWGG	3 cut(s)	417, 427, 445
FaeI	CATG	6 cut(s)	74, 232, 449, 518, 632, 641
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 383, 415
FatI	CATG	6 cut(s)	70, 228, 445, 514, 628, 637
Fnu4HI	GCNGC	6 cut(s)	6, 9, 103, 463, 521, 666
FokI	GGATG	3 cut(s)	21, 74, 497
Fsp4HI	GCNGC	6 cut(s)	6, 9, 103, 463, 521, 666
FspBI	CTAG	2 cut(s)	428, 662
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	6 cut(s)	6, 9, 103, 463, 521, 666
GsaI	CCCAGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	730
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	2 cut(s)	38, 332
HhaI	GCGC	1 cut(s)	729
Hin1I	GRCGYC	1 cut(s)	727
Hin1II	CATG	6 cut(s)	74, 232, 449, 518, 632, 641
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	2 cut(s)	614, 711
HpaII	CCGG	2 cut(s)	38, 332
HphI	GGTGA	2 cut(s)	443, 706
Hpy188I	TCNGA	4 cut(s)	222, 371, 509, 704
Hpy188III	TCNNGA	5 cut(s)	154, 211, 229, 332, 515
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	5 cut(s)	10, 86, 191, 452, 637
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	296, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
HpyF3I	CTNAG	4 cut(s)	43, 137, 583, 597
Hsp92I	GRCGYC	1 cut(s)	727
Hsp92II	CATG	6 cut(s)	74, 232, 449, 518, 632, 641
HspAI	GCGC	1 cut(s)	727
KasI	GGCGCC	1 cut(s)	726
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	6 cut(s)	31, 54, 225, 328, 433, 670
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	5 cut(s)	17, 20, 89, 474, 507
LweI	GCATC	2 cut(s)	204, 475
MaeI	CTAG	2 cut(s)	428, 662
MalI	GATC	6 cut(s)	33, 56, 227, 330, 435, 672
MboI	GATC	6 cut(s)	31, 54, 225, 328, 433, 670
MboII	GAAGA	8 cut(s)	32, 59, 155, 235, 250, 253, 269, 683
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	2 cut(s)	54, 670
MluCI	AATT	2 cut(s)	125, 683
Mly113I	GGCGCC	1 cut(s)	727
MlyI	GAGTC	1 cut(s)	705
MmeI	TCCRAC	3 cut(s)	334, 523, 682
MnlI	CCTC	6 cut(s)	343, 539, 592, 595, 598, 728
MroI	TCCGGA	1 cut(s)	331
MroXI	GAANNNNTTC	2 cut(s)	656, 687
MseI	TTAA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	2 cut(s)	38, 332
MspR9I	CCNGG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	130, 302, 529
NarI	GGCGCC	1 cut(s)	727
NcoI	CCATGG	1 cut(s)	445
NdeII	GATC	6 cut(s)	31, 54, 225, 328, 433, 670
NlaIII	CATG	6 cut(s)	74, 232, 449, 518, 632, 641
NlaIV	GGNNCC	1 cut(s)	728
PagI	TCATGA	2 cut(s)	228, 514
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	2 cut(s)	656, 687
PfeI	GAWTC	1 cut(s)	614
PflFI	GACNNNGTC	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	6 cut(s)	7, 10, 104, 464, 522, 667
PleI	GAGTC	1 cut(s)	705
PluTI	GGCGCC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	728
PstI	CTGCAG	1 cut(s)	725
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	54, 670
PsyI	GACNNNGTC	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	6 cut(s)	6, 9, 103, 463, 521, 666
Sau3AI	GATC	6 cut(s)	31, 54, 225, 328, 433, 670
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	1 cut(s)	92
SfaNI	GCATC	2 cut(s)	204, 475
SfcI	CTRYAG	1 cut(s)	721
SfoI	GGCGCC	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	125, 683
SsiI	CCGC	2 cut(s)	169, 666
SspDI	GGCGCC	1 cut(s)	726
SspMI	CTAG	2 cut(s)	428, 662
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	3 cut(s)	417, 427, 445
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	3 cut(s)	30, 212, 327
TasI	AATT	2 cut(s)	125, 683
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseI	GCWGC	5 cut(s)	5, 8, 102, 462, 520
TspDTI	ATGAA	5 cut(s)	194, 210, 245, 355, 542
TspGWI	ACGGA	1 cut(s)	688
Tth111I	GACNNNGTC	1 cut(s)	149
XmaJI	CCTAGG	1 cut(s)	427
XmnI	GAANNNNTTC	2 cut(s)	656, 687
XspI	CTAG	2 cut(s)	428, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.