Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

61086121 .. 61087932

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21171

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCAGTACATCTTGGAAACAAGCTGCTATCCAAGAGAACACGAACTATTGAAGCAGCTAAGGGAAGCAACTTTCGACAAATACCAGTTCTGGAGTATTATGAATGTGCCAGTTGATGAAGGGTTGCTTCTCTCCGTGCTTCTAAAGATCAATGCAAAGAAGATATTGGAGTTGGGAGTGTTTACTGGTTATTCTCTTCTGACCACCGCTCTTGCCCTACCGGCTGATGGCAAAATAACAGCAATCGATCCAGATAAAGAAGCCTACGAGGTTGGATTGCCGTTCATTCAAAAGGCCGGGGTGGAGCATAAGATTGACTTCTTTCACTCAGATGCCTTCTCAGTCCTAAAGGATCTCATTAACAATGGCAAGGAAGAAGGGAGCTTTGACTTCGCATTTGTGGATGCTGACAAGGAGAACTACATCAATTATCACAAGCTTCTAGTAAAGCTTGTTAAAGTTGGTGGGATAATAGCTTACGATAACACACAGTGGTTTGGATCGGTTGCAGAACCGGCCGGAGGAGACGGTGGCGAAACCTTTAAGGCCAGGCAGAAATCATGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

189

Amino Acids

21.13

Weight (kDa)

5.04

Isoelectric Point (pI)

20.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	6 - 173	2.7e-67	O-methyltransferase
Methyltransf_24	PF13578	56 - 162	1.3e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	3 cut(s)	242, 360, 508
AcoI	YGGCCR	1 cut(s)	516
AdeI	CACNNNGTG	1 cut(s)	492
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	227, 521
AgsI	TTSAA	2 cut(s)	52, 290
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	6 cut(s)	24, 58, 384, 439, 451, 476
AluI	AGCT	6 cut(s)	24, 58, 384, 439, 451, 476
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	3 cut(s)	242, 360, 508
AoxI	GGCC	3 cut(s)	294, 516, 546
ApeKI	GCWGC	2 cut(s)	24, 55
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AsuC2I	CCSGG	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	11, 67
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	1 cut(s)	443
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	25, 56
BlsI	GCNGC	2 cut(s)	26, 57
Bme1390I	CCNGG	2 cut(s)	298, 550
BmrFI	CCNGG	2 cut(s)	298, 550
BmsI	GCATC	2 cut(s)	322, 394
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	298
Bsa29I	ATCGAT	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 521
Bse118I	RCCGGY	2 cut(s)	220, 514
Bse1I	ACTGG	3 cut(s)	85, 110, 190
BseBI	CCWGG	1 cut(s)	550
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	227, 521
BseMII	CTCAG	2 cut(s)	342, 354
BseNI	ACTGG	3 cut(s)	85, 110, 190
BseRI	GAGGAG	1 cut(s)	537
BseX3I	CGGCCG	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	11, 67
Bsh1285I	CGRYCG	1 cut(s)	519
BshFI	GGCC	3 cut(s)	296, 518, 548
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	519
BsiSI	CCGG	4 cut(s)	221, 297, 515, 519
BslI	CCNNNNNNNGG	2 cut(s)	227, 521
BsmAI	GTCTC	1 cut(s)	519
BsmBI	CGTCTC	1 cut(s)	519
BsnI	GGCC	3 cut(s)	296, 518, 548
Bsp143I	GATC	4 cut(s)	147, 247, 352, 500
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	3 cut(s)	296, 518, 548
BspCNI	CTCAG	2 cut(s)	341, 353
BspDI	ATCGAT	1 cut(s)	246
BspPI	GGATC	3 cut(s)	242, 360, 508
BsrBI	CCGCTC	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	220, 514
BsrI	ACTGG	3 cut(s)	85, 110, 190
BssAI	RCCGGY	2 cut(s)	220, 514
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	4 cut(s)	147, 247, 352, 500
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	2 cut(s)	492, 530
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	3 cut(s)	59, 328, 340
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	4 cut(s)	150, 250, 355, 503
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	4 cut(s)	147, 247, 352, 500
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 515
BstNI	CCWGG	1 cut(s)	550
BstSCI	CCNGG	2 cut(s)	296, 548
BstV1I	GCAGC	2 cut(s)	11, 67
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BstZI	CGGCCG	1 cut(s)	516
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	296, 518, 548
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	497
Cfr10I	RCCGGY	2 cut(s)	220, 514
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	7
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	1 cut(s)	561
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	59, 328, 340
DpnI	GATC	4 cut(s)	149, 249, 354, 502
DpnII	GATC	4 cut(s)	147, 247, 352, 500
DraIII	CACNNNGTG	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	516
EagI	CGGCCG	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EclXI	CGGCCG	1 cut(s)	516
Eco52I	CGGCCG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	548
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	1 cut(s)	564
FaiI	YATR	3 cut(s)	101, 309, 562
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 302, 334
FatI	CATG	1 cut(s)	560
Fnu4HI	GCNGC	2 cut(s)	25, 56
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	25, 56
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	2 cut(s)	25, 56
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	296, 518, 548
HapII	CCGG	4 cut(s)	221, 297, 515, 519
Hin1II	CATG	1 cut(s)	564
HindIII	AAGCTT	2 cut(s)	437, 449
HpaII	CCGG	4 cut(s)	221, 297, 515, 519
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	201, 331
Hpy188III	TCNNGA	2 cut(s)	91, 251
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	3 cut(s)	113, 346, 371
HpyCH4III	ACNGT	2 cut(s)	492, 530
HpyCH4V	TGCA	3 cut(s)	4, 155, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 515
HpyF3I	CTNAG	3 cut(s)	59, 328, 340
Hsp92II	CATG	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	147, 247, 352, 500
LmnI	GCTCC	2 cut(s)	304, 381
Lsp1109I	GCAGC	2 cut(s)	11, 67
LweI	GCATC	2 cut(s)	322, 394
MaeI	CTAG	1 cut(s)	443
MalI	GATC	4 cut(s)	149, 249, 354, 502
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	4 cut(s)	147, 247, 352, 500
MboII	GAAGA	3 cut(s)	172, 188, 386
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	2 cut(s)	262, 515
MseI	TTAA	4 cut(s)	360, 456, 543, 568
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	4 cut(s)	221, 297, 515, 519
MspR9I	CCNGG	2 cut(s)	298, 550
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	2 cut(s)	221, 515
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	4 cut(s)	147, 247, 352, 500
NlaIII	CATG	1 cut(s)	564
PkrI	GCNGC	2 cut(s)	26, 57
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	360, 456, 543, 568
SatI	GCNGC	2 cut(s)	25, 56
Sau3AI	GATC	4 cut(s)	147, 247, 352, 500
ScrFI	CCNGG	2 cut(s)	298, 550
SetI	ASST	8 cut(s)	26, 60, 273, 386, 441, 453, 478, 542
SfaNI	GCATC	2 cut(s)	322, 394
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	296, 548
TaaI	ACNGT	2 cut(s)	492, 530
TaqI	TCGA	2 cut(s)	75, 246
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	6
Tru1I	TTAA	4 cut(s)	360, 456, 543, 568
Tru9I	TTAA	4 cut(s)	360, 456, 543, 568
TscAI	CASTG	1 cut(s)	497
TseI	GCWGC	2 cut(s)	24, 55
TspDTI	ATGAA	3 cut(s)	116, 132, 274
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	497
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.