MD02G1073200.v1.1

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000994
Physical Location & Seq
Reverse (-)
5902646 .. 5902927
282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1073200.v1.1.491

Sequence Viewer

Length: 231 bp
ATGGTAATGTACGATAACACACTCTGGGGAGGAACAGTTGCTTGGCTGGAAGAGGATGTTCCGGAGGCCAAAAGGGAGTGGCGGCAGTGTGCAATTGAGTTAAACGAATTGGTTTCCGCTGACACTCGCGTCGAAATTTTCAAGGTTACGATGGGTGACGGGATCACAATATGGCGTTTGCTGATCAAGTTAAATAAAATGCTTGACGAACAAGTATTATCCATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

77

Amino Acids

8.83

Weight (kDa)

4.53

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 2 - 59 2.6e-10 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccII CGCG 1 cut(s) 129
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 2 cut(s) 82, 117
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AlwI GGATC 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 167
BccI CCATC 1 cut(s) 145
BclI TGATCA 1 cut(s) 183
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
BseAI TCCGGA 1 cut(s) 61
BseGI GGATG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 62
BsnI GGCC 1 cut(s) 68
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 2 cut(s) 162, 183
BspACI CCGC 2 cut(s) 82, 117
BspANI GGCC 1 cut(s) 68
BspEI TCCGGA 1 cut(s) 61
BspFNI CGCG 1 cut(s) 129
BspPI GGATC 1 cut(s) 170
BssMI GATC 2 cut(s) 162, 183
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 45
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 2 cut(s) 165, 186
BstMBI GATC 2 cut(s) 162, 183
BstUI CGCG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 92
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 10
CviJI RGCY 2 cut(s) 46, 68
CviKI_1 RGCY 2 cut(s) 46, 68
CviQI GTAC 1 cut(s) 10
DpnI GATC 2 cut(s) 164, 185
DpnII GATC 2 cut(s) 162, 183
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
FaiI YATR 2 cut(s) 172, 224
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 62
HgaI GACGC 1 cut(s) 118
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 162, 183
LpnPI CCDG 3 cut(s) 10, 32, 75
MaeIII GTNAC 2 cut(s) 145, 155
MalI GATC 2 cut(s) 164, 185
MboI GATC 2 cut(s) 162, 183
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 1 cut(s) 93
MluCI AATT 3 cut(s) 93, 107, 135
MnlI CCTC 3 cut(s) 23, 46, 58
MroI TCCGGA 1 cut(s) 61
MseI TTAA 2 cut(s) 101, 191
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 93
MvnI CGCG 1 cut(s) 129
NdeII GATC 2 cut(s) 162, 183
NmuCI GTSAC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 84
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 101, 191
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 162, 183
SetI ASST 1 cut(s) 147
Sse9I AATT 3 cut(s) 93, 107, 135
SsiI CCGC 2 cut(s) 82, 117
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 132
TasI AATT 3 cut(s) 93, 107, 135
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 101, 191
Tru9I TTAA 2 cut(s) 101, 191
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspRI CASTG 1 cut(s) 92
XapI RAATTY 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.