Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

85381087 .. 85381422

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATTGTGACATTGTCTTTCTCATGGTTTGTGGACGGGTTTCAGCATGAAAATGAAGGAAGTTTCGACTTTGCTTTCATTGATGCAGACAAGGTTAACTACTGCAATTACCATGAGAGACTAATGAAGCTGCTGAAGGTGGGGGGTATAGCTGTGTATGATAACACTCTATGGGGAGGGACAGTTGTAATGCATATTGAGTCGACTCCGGAACAGATGAAACTAGGCAGACAGTCTATTATGGAGCTCAATAATTTGCTCGCTGCTGATACTCGGGTCCAAATTTCCCATGCTGCTTTGGGTGATTGGATCACAATTTGTAGGCGACTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

111

Amino Acids

12.72

Weight (kDa)

5.42

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	14 - 110	4.2e-30	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	208
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	332
AluBI	AGCT	3 cut(s)	130, 152, 247
AluI	AGCT	3 cut(s)	130, 152, 247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	130, 263, 293
ApoI	RAATTY	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	117, 250, 280
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	3 cut(s)	131, 264, 294
BlsI	GCNGC	3 cut(s)	132, 265, 295
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	278
BmsI	GCATC	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
BseAI	TCCGGA	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	117, 250, 280
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	317
BssMI	GATC	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	184, 234, 330
BstC8I	GCNNGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	117, 250, 280
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	4 cut(s)	24, 47, 113, 290
CviJI	RGCY	3 cut(s)	130, 152, 247
CviKI_1	RGCY	3 cut(s)	130, 152, 247
CviQI	GTAC	1 cut(s)	331
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	4 cut(s)	27, 50, 116, 293
FaiI	YATR	9 cut(s)	25, 48, 114, 149, 159, 172, 195, 242, 291
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	4 cut(s)	23, 46, 112, 289
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	3 cut(s)	131, 264, 294
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	131, 264, 294
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	3 cut(s)	131, 264, 294
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	4 cut(s)	27, 50, 116, 293
HincII	GTYRAC	2 cut(s)	97, 204
HindII	GTYRAC	2 cut(s)	97, 204
HinfI	GANTC	2 cut(s)	200, 205
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	34, 97, 204
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	3 cut(s)	34, 97, 204
HpyAV	CCTTC	2 cut(s)	50, 130
HpyCH4III	ACNGT	3 cut(s)	184, 234, 330
HpyCH4V	TGCA	3 cut(s)	86, 105, 193
Hsp92II	CATG	4 cut(s)	27, 50, 116, 293
Kpn2I	TCCGGA	1 cut(s)	208
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	1 cut(s)	222
Lsp1109I	GCAGC	3 cut(s)	117, 250, 280
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	106, 253, 282, 315
MlyI	GAGTC	2 cut(s)	199, 209
MnlI	CCTC	1 cut(s)	170
Mph1103I	ATGCAT	1 cut(s)	195
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	4 cut(s)	27, 50, 116, 293
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	195
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	132, 265, 295
PleI	GAGTC	2 cut(s)	199, 208
PpsI	GAGTC	2 cut(s)	199, 208
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	131, 264, 294
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	199, 209
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	5 cut(s)	96, 132, 141, 154, 249
SfaNI	GCATC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	4 cut(s)	106, 253, 282, 315
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	184, 234, 330
TaqI	TCGA	2 cut(s)	66, 203
TasI	AATT	4 cut(s)	106, 253, 282, 315
TatI	WGTACW	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	3 cut(s)	130, 263, 293
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	5 cut(s)	63, 67, 69, 140, 233
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.