Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

85378906 .. 85379241

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATTGTGACATTATCTTTCTCATGGTTTGTGGATGGCTTGCAGCATGAAAATGAAGGAAGTTTTGACTTTGCTTTTGTCGATGCGGACAAGGTTAACTATTGGAATTACCATGAGAGACTAATGAAGCTGCTGAAGGTGGGAGGTGTAGCTGTGTATGATAACACTCTGTGGGGAGGGTCAGTTATAATGCCTATTGAGTCGACTCCAGAACACATGAAACCAGGCAGACAGTATACTATAGAGCTCAACAAGTTACTTGCTGCTGATACTCGTGTCCAAATTTCGCATGCTTCTTTGGGTGATGGGATCACAATTTGTAGGCGACTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

111

Amino Acids

12.64

Weight (kDa)

5.72

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	13 - 110	6.9e-32	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AccI	GTMKAC	2 cut(s)	203, 236
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	130, 152, 247
AluI	AGCT	3 cut(s)	130, 152, 247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	317
ApeKI	GCWGC	3 cut(s)	43, 130, 263
ApoI	RAATTY	1 cut(s)	282
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsuHPI	GGTGA	1 cut(s)	314
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	55, 117, 250
BccI	CCATC	2 cut(s)	29, 299
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	3 cut(s)	44, 131, 264
BlsI	GCNGC	3 cut(s)	45, 132, 265
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	55, 117, 250
BsiHKAI	GWGCWC	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	309
BspACI	CCGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	317
BssMI	GATC	1 cut(s)	309
BssNAI	GTATAC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	273
Bst1107I	GTATAC	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	41, 291
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	55, 117, 250
BstZ17I	GTATAC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	41, 291
CviAII	CATG	5 cut(s)	24, 47, 113, 217, 290
CviJI	RGCY	4 cut(s)	39, 130, 152, 247
CviKI_1	RGCY	4 cut(s)	39, 130, 152, 247
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
DraIII	CACNNNGTG	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	5 cut(s)	27, 50, 116, 220, 293
FatI	CATG	5 cut(s)	23, 46, 112, 216, 289
FblI	GTMKAC	2 cut(s)	203, 236
Fnu4HI	GCNGC	3 cut(s)	44, 131, 264
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	44, 131, 264
GluI	GCNGC	3 cut(s)	44, 131, 264
GsuI	CTGGAG	1 cut(s)	192
Hin1II	CATG	5 cut(s)	27, 50, 116, 220, 293
HincII	GTYRAC	2 cut(s)	97, 204
HindII	GTYRAC	2 cut(s)	97, 204
HinfI	GANTC	2 cut(s)	200, 205
HpaI	GTTAAC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	97, 204, 237
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	3 cut(s)	97, 204, 237
HpyAV	CCTTC	2 cut(s)	50, 130
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	43
Hsp92II	CATG	5 cut(s)	27, 50, 116, 220, 293
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	309
LpnPI	CCDG	3 cut(s)	210, 222, 237
Lsp1109I	GCAGC	3 cut(s)	55, 117, 250
LweI	GCATC	1 cut(s)	73
MaeIII	GTNAC	2 cut(s)	7, 255
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	106, 282, 315
MlyI	GAGTC	2 cut(s)	199, 209
MnlI	CCTC	2 cut(s)	137, 170
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	5 cut(s)	27, 50, 116, 220, 293
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	45, 132, 265
PleI	GAGTC	2 cut(s)	199, 208
PpsI	GAGTC	2 cut(s)	199, 208
PsiI	TTATAA	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	44, 131, 264
Sau3AI	GATC	1 cut(s)	309
SchI	GAGTC	2 cut(s)	199, 209
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	6 cut(s)	96, 132, 141, 148, 154, 249
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	3 cut(s)	106, 282, 315
SsiI	CCGC	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	81, 203
TasI	AATT	3 cut(s)	106, 282, 315
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	3 cut(s)	43, 130, 263
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	63, 69, 140, 233
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	2 cut(s)	203, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.