Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

56797570 .. 56799804

Gene Structure 2235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTGCTCCTGTTGTAGCAGAAAAGATCATACTCAAAAGCCCAGCCCTTCTGAAGTACATCTTGGAAACAAGCTGCTATCCAAGAGAACACGAGCTATTGAAGCAGCTAAGGGAAGCAACTGTCGAGAAATACCAGTTCTGGAGTATTATGAATGTGCCAGTTGATGAAGGGTTGCTTCTCTCCGTGCTTCTAAAGATCAATGCAAAGAAGACATTGGAGTTGGGAGTGTTTACTGGTTATTCTCTTCTGACCACCGCTCTTGCCCTACCGGCTGATGGCAAAATAACAGCAATCGATCCAGATAAAGAAGCCTACGAGGTTGGATTGCCGTTCATTCAAAAGGCCGGGGTGGAGCATAAGATTGACGTCTTTCACTCAGATGCCTTCTCAGTCCTAAAGGATCTCATTAACAATGGCAAGGAAGAAGGGAGCTTTGACTTCGCATTTGTGGATGCTGACAAGGAGAACTACATCAATTATCACAAGCTGCTAGTAAAGCTTGTTAAAGTTGGTGGGATAATAGATTACGATAACACACTGTGGTTTGGATCGGTTGCAGAACCGGAGGAGACGGTGGCGAAACCTTTAAGGGCAGGCAGAAATCATGTGATTAAGCTGAACAACTTTCTGGCAGGCGATTCTCGTGTTGAACTAGCTTTTGTTTCAATCGGGGATGGCCTCACCCTATGCAGGCGCCTAGCCTCTACTGAAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

240

Amino Acids

26.61

Weight (kDa)

5.47

Isoelectric Point (pI)

25.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	23 - 234	6.9e-81	O-methyltransferase
Methyltransf_24	PF13578	73 - 179	1.6e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	696
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	3 cut(s)	293, 411, 559
AcuI	CTGAAG	1 cut(s)	74
AcyI	GRCGYC	2 cut(s)	369, 697
AdeI	CACNNNGTG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	278, 693
AgsI	TTSAA	4 cut(s)	103, 341, 653, 669
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	8 cut(s)	75, 97, 109, 435, 490, 502, 619, 659
AluI	AGCT	8 cut(s)	75, 97, 109, 435, 490, 502, 619, 659
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	3 cut(s)	293, 411, 559
AoxI	GGCC	2 cut(s)	345, 679
ApeKI	GCWGC	4 cut(s)	5, 75, 106, 490
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspLEI	GCGC	1 cut(s)	699
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	696
BauI	CACGAG	2 cut(s)	92, 645
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	62, 118, 477
BccI	CCATC	2 cut(s)	272, 671
BceAI	ACGGC	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	3 cut(s)	494, 656, 701
BfoI	RGCGCY	1 cut(s)	700
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	4 cut(s)	6, 76, 107, 491
BlsI	GCNGC	4 cut(s)	7, 77, 108, 492
Bme1390I	CCNGG	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	698
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	373, 445
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	349
Bsa29I	ATCGAT	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	369, 697
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 693
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	3 cut(s)	136, 161, 241
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	460, 682
BseLI	CCNNNNNNNGG	2 cut(s)	278, 693
BseMII	CTCAG	2 cut(s)	393, 405
BseNI	ACTGG	3 cut(s)	136, 161, 241
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	62, 118, 477
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	2 cut(s)	347, 681
BshNI	GGYRCC	1 cut(s)	696
BshVI	ATCGAT	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	272, 348, 566
BslI	CCNNNNNNNGG	2 cut(s)	278, 693
BsmAI	GTCTC	1 cut(s)	566
BsmBI	CGTCTC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	347, 681
Bsp143I	GATC	5 cut(s)	27, 198, 298, 403, 551
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	2 cut(s)	347, 681
BspCNI	CTCAG	2 cut(s)	392, 404
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	698
BspPI	GGATC	3 cut(s)	293, 411, 559
BspT107I	GGYRCC	1 cut(s)	696
BsrBI	CCGCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	136, 161, 241
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	5 cut(s)	27, 198, 298, 403, 551
BssNI	GRCGYC	2 cut(s)	369, 697
BssSI	CACGAG	2 cut(s)	92, 645
Bst2BI	CACGAG	2 cut(s)	92, 645
Bst4CI	ACNGT	3 cut(s)	124, 543, 577
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	2 cut(s)	369, 697
BstC8I	GCNNGC	3 cut(s)	598, 637, 695
BstDEI	CTNAG	3 cut(s)	110, 379, 391
BstF5I	GGATG	2 cut(s)	460, 682
BstH2I	RGCGCY	1 cut(s)	700
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	5 cut(s)	30, 201, 301, 406, 554
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	5 cut(s)	27, 198, 298, 403, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 272, 499
BstSCI	CCNGG	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	62, 118, 477
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	347, 681
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	460, 682
BtsIMutI	CAGTG	1 cut(s)	539
Cac8I	GCNNGC	3 cut(s)	598, 637, 695
CfoI	GCGC	1 cut(s)	699
Cfr10I	RCCGGY	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	1 cut(s)	608
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	110, 379, 391
DinI	GGCGCC	1 cut(s)	698
DpnI	GATC	5 cut(s)	29, 200, 300, 405, 553
DpnII	GATC	5 cut(s)	27, 198, 298, 403, 551
DraIII	CACNNNGTG	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	74
EgeI	GGCGCC	1 cut(s)	698
EheI	GGCGCC	1 cut(s)	698
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	1 cut(s)	611
FaiI	YATR	5 cut(s)	32, 152, 360, 609, 691
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 162, 194
FatI	CATG	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	6, 76, 107, 491
FokI	GGATG	2 cut(s)	467, 689
Fsp4HI	GCNGC	4 cut(s)	6, 76, 107, 491
FspBI	CTAG	3 cut(s)	494, 656, 701
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	4 cut(s)	6, 76, 107, 491
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	700
HaeIII	GGCC	2 cut(s)	347, 681
HapII	CCGG	3 cut(s)	272, 348, 566
HhaI	GCGC	1 cut(s)	699
Hin1I	GRCGYC	2 cut(s)	369, 697
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	1 cut(s)	641
HpaII	CCGG	3 cut(s)	272, 348, 566
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	3 cut(s)	54, 252, 382
Hpy188III	TCNNGA	3 cut(s)	127, 142, 302
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	4 cut(s)	59, 164, 397, 422
HpyCH4III	ACNGT	3 cut(s)	124, 543, 577
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	206, 560, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 272, 499
HpyF3I	CTNAG	3 cut(s)	110, 379, 391
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	2 cut(s)	369, 697
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	1 cut(s)	697
KasI	GGCGCC	1 cut(s)	696
Kzo9I	GATC	5 cut(s)	27, 198, 298, 403, 551
LmnI	GCTCC	3 cut(s)	13, 355, 432
Lsp1109I	GCAGC	3 cut(s)	62, 118, 477
LweI	GCATC	2 cut(s)	373, 445
MaeI	CTAG	3 cut(s)	494, 656, 701
MaeII	ACGT	1 cut(s)	369
MalI	GATC	5 cut(s)	29, 200, 300, 405, 553
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	5 cut(s)	27, 198, 298, 403, 551
MboII	GAAGA	3 cut(s)	223, 239, 437
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	2 cut(s)	478, 718
Mly113I	GGCGCC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	4 cut(s)	313, 562, 692, 715
MseI	TTAA	4 cut(s)	411, 507, 590, 615
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	3 cut(s)	272, 348, 566
MspR9I	CCNGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	3 cut(s)	103, 272, 499
NarI	GGCGCC	1 cut(s)	697
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	5 cut(s)	27, 198, 298, 403, 551
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	1 cut(s)	698
PfeI	GAWTC	1 cut(s)	641
PkrI	GCNGC	4 cut(s)	7, 77, 108, 492
PluTI	GGCGCC	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	4 cut(s)	411, 507, 590, 615
SatI	GCNGC	4 cut(s)	6, 76, 107, 491
Sau3AI	GATC	5 cut(s)	27, 198, 298, 403, 551
ScrFI	CCNGG	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	373, 445
SfoI	GGCGCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	2 cut(s)	478, 718
SsiI	CCGC	1 cut(s)	258
SspDI	GGCGCC	1 cut(s)	696
SspMI	CTAG	3 cut(s)	494, 656, 701
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	124, 543, 577
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	126, 297
TasI	AATT	2 cut(s)	478, 718
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	4 cut(s)	411, 507, 590, 615
Tru9I	TTAA	4 cut(s)	411, 507, 590, 615
TscAI	CASTG	1 cut(s)	546
TseI	GCWGC	4 cut(s)	5, 75, 106, 490
TspDTI	ATGAA	3 cut(s)	167, 183, 325
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	546
XspI	CTAG	3 cut(s)	494, 656, 701
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.