Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

52570632 .. 52575442

Gene Structure 4811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATGTGCCTGTGGATGAAGGGTTACTTCTTTCCATGTTTCTGAAGATGATGAATGCAAAGAAAACATTGGAACTTGGAGTGTTTACTGGCTATTCTCTTCTCAGTACTGCTCTTGCACTACCTGCTGATGGCAAAATAACAGCAATAGATCCAGATAAAGAGGCCTACAAGTTTGGACTGCCATTCTTTCAAAAGGCTGGGGTGGAGCATAAAATTGACTTCTTTCACTCAGATGCCTTCACAGTCTTAAATGATCTCATTAGCAGTGGCAAGGAAGAAGGGAGCTTCGATTTTGCATTTGTGGATGCGGACAAGCAAAACTATCTCAAGTATCATGAGCTTCTAATGAAACTTGTTAAGGTTGGTGGAATCATAGCTTACGATAACACACTGTGGTTTGGAACAGTTGCAGAACCTGAGGAAATGATGAAGGAATCATATTTAAGGGAAGGCAGAAATGATGTGATTGAAGTGAACAATTACCTAGCCGCCGATCCTCGTGTCGAATTAGCTCTTGTTTCCATTGGGGATGGCCTCACCCTCTGCAGACGCCTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

187

Amino Acids

20.93

Weight (kDa)

4.83

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	1 - 186	5.6e-75	O-methyltransferase
Methyltransf_24	PF13578	24 - 130	1.6e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AciI	CCGC	2 cut(s)	311, 492
AclWI	GGATC	2 cut(s)	146, 491
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	553
AdeI	CACNNNGTG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	194, 473
AluBI	AGCT	4 cut(s)	288, 343, 380, 515
AluI	AGCT	4 cut(s)	288, 343, 380, 515
AlwI	GGATC	2 cut(s)	146, 491
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	165, 535
AsuHPI	GGTGA	1 cut(s)	532
AxyI	CCTNAGG	1 cut(s)	420
BauI	CACGAG	1 cut(s)	501
BccI	CCATC	2 cut(s)	125, 527
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	547
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
BmcAI	AGTACT	1 cut(s)	109
BmsI	GCATC	2 cut(s)	226, 298
BpuEI	CTTGAG	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	94
Bse21I	CCTNAGG	1 cut(s)	420
BseGI	GGATG	3 cut(s)	22, 313, 538
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	118, 246, 411
BseNI	ACTGG	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	200
BshFI	GGCC	2 cut(s)	167, 537
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	167, 537
Bsp143I	GATC	3 cut(s)	151, 256, 496
BspACI	CCGC	2 cut(s)	311, 492
BspANI	GGCC	2 cut(s)	167, 537
BspCNI	CTCAG	3 cut(s)	117, 245, 412
BspHI	TCATGA	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	551
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	146, 491
BsrI	ACTGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	151, 256, 496
BssNI	GRCGYC	1 cut(s)	553
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	247, 396, 409
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	553
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	104, 232, 420
BstF5I	GGATG	3 cut(s)	22, 313, 538
BstKTI	GATC	3 cut(s)	154, 259, 499
BstMBI	GATC	3 cut(s)	151, 256, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	167, 537
BtsCI	GGATG	3 cut(s)	22, 313, 538
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	274, 392
BveI	ACCTGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	37, 338
CviJI	RGCY	9 cut(s)	93, 167, 200, 288, 343, 380, 491, 515, 537
CviKI_1	RGCY	9 cut(s)	93, 167, 200, 288, 343, 380, 491, 515, 537
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	104, 232, 420
DpnI	GATC	3 cut(s)	153, 258, 498
DpnII	GATC	3 cut(s)	151, 256, 496
DraIII	CACNNNGTG	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	420
FaeI	CATG	2 cut(s)	40, 341
FaiI	YATR	5 cut(s)	38, 213, 339, 377, 442
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	2 cut(s)	36, 337
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	3 cut(s)	29, 320, 545
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	1 cut(s)	492
GsaI	CCCAGC	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	167, 537
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	2 cut(s)	40, 341
HinfI	GANTC	2 cut(s)	372, 437
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	2 cut(s)	87, 478
Hpy188I	TCNGA	2 cut(s)	45, 235
Hpy188III	TCNNGA	2 cut(s)	155, 338
Hpy8I	GTNNAC	2 cut(s)	87, 478
HpyAV	CCTTC	5 cut(s)	14, 250, 275, 427, 446
HpyCH4III	ACNGT	3 cut(s)	247, 396, 409
HpyCH4V	TGCA	5 cut(s)	59, 119, 299, 413, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	3 cut(s)	104, 232, 420
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	40, 341
Kzo9I	GATC	3 cut(s)	151, 256, 496
LmnI	GCTCC	2 cut(s)	208, 285
LpnPI	CCDG	6 cut(s)	24, 75, 138, 168, 186, 432
LweI	GCATC	2 cut(s)	226, 298
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	3 cut(s)	153, 258, 498
MboI	GATC	3 cut(s)	151, 256, 496
MboII	GAAGA	3 cut(s)	58, 92, 290
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	3 cut(s)	216, 481, 509
MnlI	CCTC	5 cut(s)	157, 415, 510, 548, 554
MseI	TTAA	3 cut(s)	251, 360, 446
MslI	CAYNNNNRTG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	3 cut(s)	151, 256, 496
NlaIII	CATG	2 cut(s)	40, 341
PagI	TCATGA	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	167
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	372, 437
PkrI	GCNGC	1 cut(s)	493
PspFI	CCCAGC	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	551
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	251, 360, 446
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	3 cut(s)	151, 256, 496
ScaI	AGTACT	1 cut(s)	109
SetI	ASST	8 cut(s)	127, 290, 345, 366, 382, 421, 489, 517
SfaNI	GCATC	2 cut(s)	226, 298
SfcI	CTRYAG	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	216, 481, 509
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	2 cut(s)	311, 492
SspMI	CTAG	1 cut(s)	488
StuI	AGGCCT	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	247, 396, 409
TaqI	TCGA	2 cut(s)	291, 507
TasI	AATT	3 cut(s)	216, 481, 509
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	372, 437
Tru1I	TTAA	3 cut(s)	251, 360, 446
Tru9I	TTAA	3 cut(s)	251, 360, 446
TscAI	CASTG	2 cut(s)	274, 399
TspDTI	ATGAA	5 cut(s)	17, 33, 68, 365, 446
TspRI	CASTG	2 cut(s)	274, 399
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.