Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

8523351 .. 8524410

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1119300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCCTCTGAAGGTGATGAATGTGAAGAAGACGTTGGAGCTCGGTGTCTTCACTGGTTATTCTCTTCTCACTACTGCTCTTGCACTGCTGCTGATGGCAAAGTATATAACAGCAATTGATGTAGATAAAGAAGCCTATGAGGTTGGACTGCCATTTATTCAGAAGGCTGGGGTGGAACATAAGATTAACTCGTGCCAGTCAGATGCCTTCACTGTCCTAAATGATTTCATTACCGAAGGGGAGGAAGAAGGGAGCTTTGATTTTGCATTTGTGGATGCCGACAAGGACTCGTACATGGAATATCACAAGCAGCTGATGAAGCTTGTGAAGGTTGGAGGAATCATAGCTTATGATAACACATTGTGGTTTGGGACAGTGGCGGAGCCTGAGGAGAATGTGCAAGAATTTGCAAGGAAGGGCAGAAAACATTTGCTGGAACTCAACAGCTTTCTCGCCGCGGATGACCGTGTTGAGCCAGCCGTTGTTTCCATCGGAGATGGACTCACCCTCTGCACGCGTCTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

176

Amino Acids

19.47

Weight (kDa)

4.74

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	2 - 173	2e-63	O-methyltransferase
Methyltransf_24	PF13578	12 - 119	1.7e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	458, 517
AciI	CCGC	3 cut(s)	380, 456, 458
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	363
AfaI	GTAC	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	515
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	6 cut(s)	40, 255, 313, 322, 347, 447
AluI	AGCT	6 cut(s)	40, 255, 313, 322, 347, 447
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	88, 310
ApoI	RAATTY	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	25, 496
AxyI	CCTNAGG	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	35, 40
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	75, 322
BccI	CCATC	3 cut(s)	88, 491, 497
BceAI	ACGGC	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	524
BisI	GCNGC	3 cut(s)	89, 311, 456
BlsI	GCNGC	3 cut(s)	90, 312, 457
BmiI	GGNNCC	1 cut(s)	384
BmsI	GCATC	2 cut(s)	193, 265
BpiI	GAAGAC	2 cut(s)	35, 40
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BsaJI	CCNNGG	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	58, 196
Bse21I	CCTNAGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	2 cut(s)	280, 466
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	58, 196
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	75, 322
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	496
Bsh1236I	CGCG	2 cut(s)	458, 517
BsiHKAI	GWGCWC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	524
BsmBI	CGTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	42
BspACI	CCGC	3 cut(s)	380, 456, 458
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	2 cut(s)	458, 517
BspLI	GGNNCC	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	58, 196
BssECI	CCNNGG	1 cut(s)	456
BssSI	CACGAG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	214, 376, 467
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	477, 515
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	280, 466
BstFNI	CGCG	2 cut(s)	458, 517
BstMAI	GTCTC	1 cut(s)	524
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstUI	CGCG	2 cut(s)	458, 517
BstV1I	GCAGC	2 cut(s)	75, 322
BstV2I	GAAGAC	2 cut(s)	35, 40
Bsu36I	CCTNAGG	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	280, 466
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	4 cut(s)	51, 83, 210, 381
Cac8I	GCNNGC	2 cut(s)	477, 515
Cfr42I	CCGCGG	1 cut(s)	459
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	387
DraIII	CACNNNGTG	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	524
FaeI	CATG	1 cut(s)	298
FaiI	YATR	7 cut(s)	105, 107, 138, 180, 296, 344, 351
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	89, 311, 456
FokI	GGATG	2 cut(s)	287, 473
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	3 cut(s)	89, 311, 456
GluI	GCNGC	3 cut(s)	89, 311, 456
GsaI	CCCAGC	1 cut(s)	171
HgaI	GACGC	1 cut(s)	506
Hin1II	CATG	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	3 cut(s)	287, 339, 501
HphI	GGTGA	2 cut(s)	25, 496
Hpy188I	TCNGA	4 cut(s)	9, 162, 202, 494
HpyAV	CCTTC	7 cut(s)	4, 157, 217, 230, 242, 322, 409
HpyCH4III	ACNGT	3 cut(s)	214, 376, 467
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	83, 266, 400, 410, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	298
KspI	CCGCGG	1 cut(s)	459
LmnI	GCTCC	3 cut(s)	37, 252, 382
LpnPI	CCDG	6 cut(s)	39, 153, 209, 399, 419, 489
Lsp1109I	GCAGC	2 cut(s)	75, 322
LweI	GCATC	2 cut(s)	193, 265
MaeII	ACGT	1 cut(s)	32
MboII	GAAGA	5 cut(s)	37, 40, 40, 56, 257
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	2 cut(s)	114, 404
MluI	ACGCGT	1 cut(s)	515
MlyI	GAGTC	2 cut(s)	281, 495
MmeI	TCCRAC	3 cut(s)	15, 124, 313
MnlI	CCTC	6 cut(s)	15, 133, 235, 329, 382, 518
MseI	TTAA	2 cut(s)	186, 526
MspA1I	CMGCKG	2 cut(s)	313, 458
MunI	CAATTG	1 cut(s)	114
MvnI	CGCG	2 cut(s)	458, 517
MwoI	GCNNNNNNNGC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	90, 312, 457
PleI	GAGTC	2 cut(s)	281, 495
PpsI	GAGTC	2 cut(s)	281, 495
Psp124BI	GAGCTC	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	42
SacII	CCGCGG	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	186, 526
SatI	GCNGC	3 cut(s)	89, 311, 456
SchI	GAGTC	2 cut(s)	281, 495
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	193, 265
Sfr303I	CCGCGG	1 cut(s)	459
SgrBI	CCGCGG	1 cut(s)	459
Sse9I	AATT	2 cut(s)	114, 404
SsiI	CCGC	3 cut(s)	380, 456, 458
SstI	GAGCTC	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	214, 376, 467
TaiI	ACGT	1 cut(s)	35
TasI	AATT	2 cut(s)	114, 404
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	2 cut(s)	186, 526
Tru9I	TTAA	2 cut(s)	186, 526
TscAI	CASTG	4 cut(s)	58, 90, 217, 381
TseI	GCWGC	2 cut(s)	88, 310
TspDTI	ATGAA	3 cut(s)	32, 217, 332
TspRI	CASTG	4 cut(s)	58, 90, 217, 381
XapI	RAATTY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.