Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

27660687 .. 27660983

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1230800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAGGGGGAGGAAGAAGGGAACTTTGATTTTGCATTTGTGGATGCTAACAAGGATAAGTACATGGAATATCATGAGCTACTGTTAAAGCTTGTTAAGGTTGGTGGAATGATCTCGTACGATAACACGTTATGGTTCGGCTCAGTGGTGGAGCCGAAGGAGAAACTAGATGAAAAAGCTAGACCAAACAGAAAACATATCTTGGAGTTGAACAGCTTTCTAGCTGCTGATTCTTGTATCGAATTGGCTCACCTTTCCGTTGGGGATGGACTCACCCTCTGCAGGCGCCTCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

99

Amino Acids

11.22

Weight (kDa)

5.32

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	3 - 97	1.9e-31	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	2 cut(s)	62, 119
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	5 cut(s)	79, 91, 179, 216, 224
AluI	AGCT	5 cut(s)	79, 91, 179, 216, 224
ApeKI	GCWGC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	242, 265
BanI	GGYRCC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	260
BfaI	CTAG	3 cut(s)	167, 180, 221
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	289
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	153, 287
BmsI	GCATC	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	49, 271
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	285
BsiWI	CGTACG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	153, 287
BspMAI	CTGCAG	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	285
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	49, 271
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	49, 271
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	284
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	61, 118
CviAII	CATG	2 cut(s)	64, 74
CviJI	RGCY	8 cut(s)	79, 91, 141, 154, 179, 216, 224, 248
CviKI_1	RGCY	8 cut(s)	79, 91, 141, 154, 179, 216, 224, 248
CviQI	GTAC	2 cut(s)	61, 118
DdeI	CTNAG	1 cut(s)	142
DinI	GGCGCC	1 cut(s)	287
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	287
EheI	GGCGCC	1 cut(s)	287
FaeI	CATG	2 cut(s)	67, 77
FaiI	YATR	4 cut(s)	65, 75, 133, 198
FatI	CATG	2 cut(s)	63, 73
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	56, 278
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	3 cut(s)	167, 180, 221
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	289
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	67, 77
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	230, 270
HphI	GGTGA	2 cut(s)	242, 265
Hpy188III	TCNNGA	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	11, 151
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	4, 35, 282
HpyF3I	CTNAG	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	67, 77
HspAI	GCGC	1 cut(s)	286
KasI	GGCGCC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	3 cut(s)	167, 180, 221
MaeII	ACGT	1 cut(s)	128
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	1 cut(s)	242
Mly113I	GGCGCC	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	2 cut(s)	4, 287
MseI	TTAA	2 cut(s)	86, 96
NarI	GGCGCC	1 cut(s)	286
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	67, 77
NlaIV	GGNNCC	2 cut(s)	153, 287
PagI	TCATGA	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	230
Pfl23II	CGTACG	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	264
PluTI	GGCGCC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	264
PspLI	CGTACG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	153, 287
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	62, 119
RsaNI	GTAC	2 cut(s)	61, 118
SaqAI	TTAA	2 cut(s)	86, 96
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	264
SetI	ASST	8 cut(s)	81, 93, 102, 131, 181, 218, 226, 255
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	280
SfoI	GGCGCC	1 cut(s)	287
Sse9I	AATT	1 cut(s)	242
SspDI	GGCGCC	1 cut(s)	285
SspMI	CTAG	3 cut(s)	167, 180, 221
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	242
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	86, 96
Tru9I	TTAA	2 cut(s)	86, 96
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	2 cut(s)	247, 281
TspRI	CASTG	1 cut(s)	150
XspI	CTAG	3 cut(s)	167, 180, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.