Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

23296880 .. 23299130

Gene Structure 2251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGCTCCTGGGGTAGAAGAAAAGATCATACTCAAAAGCCCAGCCCTTCTGAAGTACATCTTGGAAACAAGCTGCCACCCAAGAGAACACGAGCTATTGAAGCAGCTAAGGGAAGCAACTGTCGAGAAATACCAGTTCTGGAGTATTATGAATGTGCCAGTTGATGAAGGGTTGCTTCTCTCCGTGCTTCTAAAGATCATGAATGCAAAGAAGACATTGGAGTTGGGAGTGTTTACTGGTTATTCTCTTCTGACCACCGCTCTTGCCCTACCGGCTGATGGCAAAATAACAGCAATCGATCCAGATAAAGAAGCCTACGAGGTTGGATTGCCGTTCATTCAAAAGGCCGGGGTGGAGCATAAGATTGACTTCTTTCACTCAGATGCCTTCTCAGTCCTAAAGGATCTCATTAACAATGGCAAGGAAGAAGGGAGCTTTGACTTCGCATTTGTGGATGCTGACAAGGAGAACTACATCAATTATCACGAGCTGCTAGTGAAGCTTGTTAAAGTTGGTGGGATAATAGCTTACGATAACACGCTGTGGTTTGGCTCGGTTGCAGAACCGGAAGAGACGGTGGCGAAACCTTTAAGGCCAGGCAGAAATCATGTGATTAAGCTGAACAACTTTCTGGCAGGCGATTCTCGTGTTGAACTAGCTTTTGTTTCCATCGGGGATGGCCTCACCCTATGCAGGCGCCTAGCCTCTACTGAAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

242

Amino Acids

26.76

Weight (kDa)

5.33

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	23 - 235	3e-84	O-methyltransferase
Methyltransf_24	PF13578	74 - 180	1.3e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	699
AccBSI	CCGCTC	1 cut(s)	263
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	2 cut(s)	296, 414
AcuI	CTGAAG	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	700
AdeI	CACNNNGTG	1 cut(s)	546
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	281, 696
AgsI	TTSAA	3 cut(s)	103, 344, 656
AjnI	CCWGG	2 cut(s)	10, 598
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	9 cut(s)	75, 97, 109, 438, 493, 505, 530, 622, 662
AluI	AGCT	9 cut(s)	75, 97, 109, 438, 493, 505, 530, 622, 662
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	296, 414
AoxI	GGCC	3 cut(s)	348, 596, 682
ApeKI	GCWGC	4 cut(s)	5, 75, 106, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspLEI	GCGC	1 cut(s)	702
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	699
BauI	CACGAG	3 cut(s)	92, 488, 648
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	62, 118, 480
BccI	CCATC	3 cut(s)	275, 674, 680
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	2 cut(s)	12, 600
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	3 cut(s)	497, 659, 704
BfoI	RGCGCY	1 cut(s)	703
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	4 cut(s)	6, 76, 107, 494
BlsI	GCNGC	4 cut(s)	7, 77, 108, 495
Bme1390I	CCNGG	3 cut(s)	12, 352, 600
BmiI	GGNNCC	1 cut(s)	701
BmrFI	CCNGG	3 cut(s)	12, 352, 600
BmsI	GCATC	2 cut(s)	376, 448
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	352
Bsa29I	ATCGAT	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	700
BsaJI	CCNNGG	2 cut(s)	11, 351
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 696
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	3 cut(s)	136, 161, 244
BseBI	CCWGG	2 cut(s)	12, 600
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	11, 351
BseGI	GGATG	2 cut(s)	463, 685
BseLI	CCNNNNNNNGG	2 cut(s)	281, 696
BseMII	CTCAG	2 cut(s)	396, 408
BseNI	ACTGG	3 cut(s)	136, 161, 244
BseXI	GCAGC	3 cut(s)	62, 118, 480
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	3 cut(s)	350, 598, 684
BshNI	GGYRCC	1 cut(s)	699
BshVI	ATCGAT	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	275, 351, 569
BslI	CCNNNNNNNGG	2 cut(s)	281, 696
BsmAI	GTCTC	1 cut(s)	569
BsmBI	CGTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	350, 598, 684
Bsp143I	GATC	4 cut(s)	27, 198, 301, 406
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	350, 598, 684
BspCNI	CTCAG	2 cut(s)	395, 407
BspDI	ATCGAT	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	701
BspPI	GGATC	2 cut(s)	296, 414
BspT107I	GGYRCC	1 cut(s)	699
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	3 cut(s)	136, 161, 244
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	11, 351
BssMI	GATC	4 cut(s)	27, 198, 301, 406
BssNI	GRCGYC	1 cut(s)	700
BssSI	CACGAG	3 cut(s)	92, 488, 648
Bst2BI	CACGAG	3 cut(s)	92, 488, 648
Bst2UI	CCWGG	2 cut(s)	12, 600
Bst4CI	ACNGT	2 cut(s)	124, 580
Bst6I	CTCTTC	2 cut(s)	255, 567
BstACI	GRCGYC	1 cut(s)	700
BstC8I	GCNNGC	2 cut(s)	640, 698
BstDEI	CTNAG	3 cut(s)	110, 382, 394
BstF5I	GGATG	2 cut(s)	463, 685
BstH2I	RGCGCY	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	4 cut(s)	30, 201, 304, 409
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	4 cut(s)	27, 198, 301, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 275, 502
BstNI	CCWGG	2 cut(s)	12, 600
BstSCI	CCNGG	3 cut(s)	10, 350, 598
BstV1I	GCAGC	3 cut(s)	62, 118, 480
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	350, 598, 684
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	463, 685
Cac8I	GCNNGC	2 cut(s)	640, 698
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	702
Cfr10I	RCCGGY	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	2 cut(s)	202, 611
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	110, 382, 394
DinI	GGCGCC	1 cut(s)	701
DpnI	GATC	4 cut(s)	29, 200, 303, 408
DpnII	GATC	4 cut(s)	27, 198, 301, 406
DraIII	CACNNNGTG	1 cut(s)	546
Eam1104I	CTCTTC	2 cut(s)	255, 567
EarI	CTCTTC	2 cut(s)	255, 567
Eco57I	CTGAAG	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	10, 598
EgeI	GGCGCC	1 cut(s)	701
EheI	GGCGCC	1 cut(s)	701
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	2 cut(s)	205, 614
FaiI	YATR	6 cut(s)	32, 152, 203, 363, 612, 694
FalI	AAGNNNNNCTT	6 cut(s)	47, 79, 162, 194, 356, 388
FatI	CATG	2 cut(s)	201, 610
Fnu4HI	GCNGC	4 cut(s)	6, 76, 107, 494
FokI	GGATG	2 cut(s)	470, 692
Fsp4HI	GCNGC	4 cut(s)	6, 76, 107, 494
FspBI	CTAG	3 cut(s)	497, 659, 704
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	4 cut(s)	6, 76, 107, 494
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	703
HaeIII	GGCC	3 cut(s)	350, 598, 684
HapII	CCGG	3 cut(s)	275, 351, 569
HhaI	GCGC	1 cut(s)	702
Hin1I	GRCGYC	1 cut(s)	700
Hin1II	CATG	2 cut(s)	205, 614
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	644
HpaII	CCGG	3 cut(s)	275, 351, 569
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	3 cut(s)	54, 255, 385
Hpy188III	TCNNGA	5 cut(s)	127, 142, 202, 305, 488
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	4 cut(s)	59, 164, 400, 425
HpyCH4III	ACNGT	2 cut(s)	124, 580
HpyCH4V	TGCA	3 cut(s)	209, 563, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 275, 502
HpyF3I	CTNAG	3 cut(s)	110, 382, 394
Hsp92I	GRCGYC	1 cut(s)	700
Hsp92II	CATG	2 cut(s)	205, 614
HspAI	GCGC	1 cut(s)	700
KasI	GGCGCC	1 cut(s)	699
Kzo9I	GATC	4 cut(s)	27, 198, 301, 406
LmnI	GCTCC	3 cut(s)	13, 358, 435
Lsp1109I	GCAGC	3 cut(s)	62, 118, 480
LweI	GCATC	2 cut(s)	376, 448
MaeI	CTAG	3 cut(s)	497, 659, 704
MalI	GATC	4 cut(s)	29, 200, 303, 408
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	4 cut(s)	27, 198, 301, 406
MboII	GAAGA	5 cut(s)	32, 226, 242, 440, 584
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	2 cut(s)	481, 721
Mly113I	GGCGCC	1 cut(s)	700
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	3 cut(s)	316, 695, 718
MseI	TTAA	4 cut(s)	414, 510, 593, 618
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	3 cut(s)	275, 351, 569
MspR9I	CCNGG	3 cut(s)	12, 352, 600
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	2 cut(s)	12, 600
MwoI	GCNNNNNNNGC	3 cut(s)	103, 275, 502
NarI	GGCGCC	1 cut(s)	700
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	4 cut(s)	27, 198, 301, 406
NlaIII	CATG	2 cut(s)	205, 614
NlaIV	GGNNCC	1 cut(s)	701
PagI	TCATGA	1 cut(s)	201
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	644
PkrI	GCNGC	4 cut(s)	7, 77, 108, 495
PluTI	GGCGCC	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	10, 598
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	10, 598
PspN4I	GGNNCC	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	414, 510, 593, 618
SatI	GCNGC	4 cut(s)	6, 76, 107, 494
Sau3AI	GATC	4 cut(s)	27, 198, 301, 406
ScrFI	CCNGG	3 cut(s)	12, 352, 600
SfaNI	GCATC	2 cut(s)	376, 448
SfoI	GGCGCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	2 cut(s)	481, 721
SsiI	CCGC	1 cut(s)	261
SspDI	GGCGCC	1 cut(s)	699
SspMI	CTAG	3 cut(s)	497, 659, 704
StyD4I	CCNGG	3 cut(s)	10, 350, 598
TaaI	ACNGT	2 cut(s)	124, 580
TaqI	TCGA	2 cut(s)	126, 300
TasI	AATT	2 cut(s)	481, 721
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	644
Tru1I	TTAA	4 cut(s)	414, 510, 593, 618
Tru9I	TTAA	4 cut(s)	414, 510, 593, 618
TseI	GCWGC	4 cut(s)	5, 75, 106, 493
TspDTI	ATGAA	4 cut(s)	167, 183, 218, 328
TspGWI	ACGGA	1 cut(s)	175
XspI	CTAG	3 cut(s)	497, 659, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.