Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

58481796 .. 58483961

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG322700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGCTAATCATGATCATGAGAAAGATTTAGACAAGATCATCCTCAAAATCCCAGCACTTCTCAAGTACATCCTAGAAACAAGCTGCTACCCCAGAGAACACGAGCAATTGAAGCAACTAAGGGAAGCAACTATCGAGAAATACCAGTTCTGGAGTCTTATGAATGTGCCTGTGGATGAAGGGTTACTTCTTTCCATGTTTCTGAAGATGATGAATGCAAAGAAAACATTGGAACTTGGAGTGTTTACTGGCTATTCTCTTCTCAGTACTGCTCTTGCACTACCTGCTGATGGCAAAATAACAGCAATAGATCCAGATAAAGAGGCCTACGAGTTTGGACTGCCATTCTTTCAAAAGGCTGGGGTGGAGCATAAAATTGACTTCTTTCACTCAGATGCCTTCACAGTCTTAAATGATCTCATTAGCAGTGGCAAGGAAGAAGGGAGCTTCGATTTTGCATTTGTGGATGCGGACAAGCAAAACTATCTCAAGTATCATGAGCTTCTAATGAAACTTGTTAAGGTTGGTGGAATCATAGCTTACGATAACACACTGTGGTTTGGAACAGTTGCAGAACCTGAGGAAATGATGAAGGAATCATATTTAAGGGAAGGCAGAAATGATGTGATTGAAGTGAACAATTATCTAGCCGCCGATCCTCGTGTCGAATTAGCTCTTGTTTCCATTGGGGATGGCCTCACCCTCTGCAGACGCCTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

241

Amino Acids

27.43

Weight (kDa)

4.98

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	27 - 240	6.7e-82	O-methyltransferase
Methyltransf_24	PF13578	78 - 184	2.4e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AciI	CCGC	2 cut(s)	473, 654
AclWI	GGATC	2 cut(s)	308, 653
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	715
AdeI	CACNNNGTG	1 cut(s)	558
AfaI	GTAC	2 cut(s)	71, 271
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	115, 356, 635
AluBI	AGCT	5 cut(s)	87, 450, 505, 542, 677
AluI	AGCT	5 cut(s)	87, 450, 505, 542, 677
AlwI	GGATC	2 cut(s)	308, 653
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	327, 697
ApeKI	GCWGC	2 cut(s)	5, 87
AsuHPI	GGTGA	1 cut(s)	694
AxyI	CCTNAGG	1 cut(s)	582
BauI	CACGAG	2 cut(s)	104, 663
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	287, 689
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	2 cut(s)	77, 650
BfmI	CTRYAG	1 cut(s)	709
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	3 cut(s)	6, 88, 654
BlsI	GCNGC	3 cut(s)	7, 89, 655
BmcAI	AGTACT	1 cut(s)	271
BmsI	GCATC	2 cut(s)	388, 460
BpmI	CTGGAG	1 cut(s)	175
BpuEI	CTTGAG	2 cut(s)	50, 476
BsaHI	GRCGYC	1 cut(s)	715
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	148, 256
Bse21I	CCTNAGG	1 cut(s)	582
BseGI	GGATG	5 cut(s)	42, 72, 184, 475, 700
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	3 cut(s)	280, 408, 573
BseNI	ACTGG	2 cut(s)	148, 256
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	2 cut(s)	55, 362
BshFI	GGCC	2 cut(s)	329, 699
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	329, 699
Bsp143I	GATC	5 cut(s)	16, 39, 313, 418, 658
BspACI	CCGC	2 cut(s)	473, 654
BspANI	GGCC	2 cut(s)	329, 699
BspCNI	CTCAG	3 cut(s)	279, 407, 574
BspHI	TCATGA	3 cut(s)	13, 19, 499
BspMAI	CTGCAG	1 cut(s)	713
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	308, 653
BsrI	ACTGG	2 cut(s)	148, 256
BssMI	GATC	5 cut(s)	16, 39, 313, 418, 658
BssNI	GRCGYC	1 cut(s)	715
BssSI	CACGAG	2 cut(s)	104, 663
Bst2BI	CACGAG	2 cut(s)	104, 663
Bst4CI	ACNGT	3 cut(s)	409, 558, 571
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	715
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	4 cut(s)	122, 266, 394, 582
BstF5I	GGATG	5 cut(s)	42, 72, 184, 475, 700
BstKTI	GATC	5 cut(s)	19, 42, 316, 421, 661
BstMBI	GATC	5 cut(s)	16, 39, 313, 418, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 287
BstSFI	CTRYAG	1 cut(s)	709
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	329, 699
BtsCI	GGATG	5 cut(s)	42, 72, 184, 475, 700
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	436, 554
BveI	ACCTGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	581
CciI	TCATGA	3 cut(s)	13, 19, 499
Csp6I	GTAC	2 cut(s)	70, 270
CviAII	CATG	4 cut(s)	14, 20, 199, 500
CviQI	GTAC	2 cut(s)	70, 270
DdeI	CTNAG	4 cut(s)	122, 266, 394, 582
DpnI	GATC	5 cut(s)	18, 41, 315, 420, 660
DpnII	GATC	5 cut(s)	16, 39, 313, 418, 658
DraIII	CACNNNGTG	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	582
FaeI	CATG	4 cut(s)	17, 23, 202, 503
FaiI	YATR	8 cut(s)	15, 21, 164, 200, 375, 501, 539, 604
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	4 cut(s)	13, 19, 198, 499
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	6, 88, 654
FokI	GGATG	5 cut(s)	29, 59, 191, 482, 707
Fsp4HI	GCNGC	3 cut(s)	6, 88, 654
FspBI	CTAG	2 cut(s)	77, 650
GluI	GCNGC	3 cut(s)	6, 88, 654
GsaI	CCCAGC	2 cut(s)	59, 366
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	329, 699
Hin1I	GRCGYC	1 cut(s)	715
Hin1II	CATG	4 cut(s)	17, 23, 202, 503
HinfI	GANTC	3 cut(s)	157, 534, 599
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	2 cut(s)	249, 640
Hpy188I	TCNGA	2 cut(s)	207, 397
Hpy188III	TCNNGA	6 cut(s)	14, 20, 139, 154, 317, 500
Hpy8I	GTNNAC	2 cut(s)	249, 640
HpyAV	CCTTC	5 cut(s)	176, 412, 437, 589, 608
HpyCH4III	ACNGT	3 cut(s)	409, 558, 571
HpyCH4V	TGCA	5 cut(s)	221, 281, 461, 575, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 287
HpyF3I	CTNAG	4 cut(s)	122, 266, 394, 582
Hsp92I	GRCGYC	1 cut(s)	715
Hsp92II	CATG	4 cut(s)	17, 23, 202, 503
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	16, 39, 313, 418, 658
LmnI	GCTCC	2 cut(s)	370, 447
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	388, 460
MaeI	CTAG	2 cut(s)	77, 650
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	5 cut(s)	18, 41, 315, 420, 660
MboI	GATC	5 cut(s)	16, 39, 313, 418, 658
MboII	GAAGA	3 cut(s)	220, 254, 452
MfeI	CAATTG	1 cut(s)	110
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	4 cut(s)	110, 378, 643, 671
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	6 cut(s)	56, 319, 577, 672, 710, 716
MseI	TTAA	3 cut(s)	413, 522, 608
MslI	CAYNNNNRTG	2 cut(s)	18, 396
MunI	CAATTG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	115, 287
NdeII	GATC	5 cut(s)	16, 39, 313, 418, 658
NlaIII	CATG	4 cut(s)	17, 23, 202, 503
PagI	TCATGA	3 cut(s)	13, 19, 499
PceI	AGGCCT	1 cut(s)	329
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	534, 599
PkrI	GCNGC	3 cut(s)	7, 89, 655
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PspFI	CCCAGC	2 cut(s)	55, 362
PstI	CTGCAG	1 cut(s)	713
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	2 cut(s)	71, 271
RsaNI	GTAC	2 cut(s)	70, 270
RseI	CAYNNNNRTG	2 cut(s)	18, 396
SaqAI	TTAA	3 cut(s)	413, 522, 608
SatI	GCNGC	3 cut(s)	6, 88, 654
Sau3AI	GATC	5 cut(s)	16, 39, 313, 418, 658
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	1 cut(s)	166
SetI	ASST	8 cut(s)	89, 289, 452, 507, 528, 544, 583, 679
SfaNI	GCATC	2 cut(s)	388, 460
SfcI	CTRYAG	1 cut(s)	709
SmiMI	CAYNNNNRTG	2 cut(s)	18, 396
SmlI	CTYRAG	2 cut(s)	65, 491
SmoI	CTYRAG	2 cut(s)	65, 491
Sse9I	AATT	4 cut(s)	110, 378, 643, 671
SseBI	AGGCCT	1 cut(s)	329
SsiI	CCGC	2 cut(s)	473, 654
SspMI	CTAG	2 cut(s)	77, 650
StuI	AGGCCT	1 cut(s)	329
TaaI	ACNGT	3 cut(s)	409, 558, 571
TaqI	TCGA	3 cut(s)	138, 453, 669
TasI	AATT	4 cut(s)	110, 378, 643, 671
TatI	WGTACW	2 cut(s)	69, 269
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	2 cut(s)	534, 599
Tru1I	TTAA	3 cut(s)	413, 522, 608
Tru9I	TTAA	3 cut(s)	413, 522, 608
TscAI	CASTG	2 cut(s)	436, 561
TseI	GCWGC	2 cut(s)	5, 87
TspDTI	ATGAA	5 cut(s)	179, 195, 230, 527, 608
TspRI	CASTG	2 cut(s)	436, 561
XspI	CTAG	2 cut(s)	77, 650
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.