Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

52631484 .. 52633694

Gene Structure 2211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG304000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCCAAGAAGACACTGGAACTTTGGAGTATTTACTGGCTATTCTCTTCTTACTGCTGCTCCTGCACTACCTGATGATGGTAGAGGCAAGGAAGAAGGGAACTTTGACTTCGCATTTGTGGATGCGGACAAGCAAAACTACCTCAACTATCACGAGCTTCTAATGAAACTTGTTAAGGTTGGTGGAGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

64

Amino Acids

7.25

Weight (kDa)

6.02

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	30 - 64	2.9e-12	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	77
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	20, 40
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	20, 40
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	20, 40
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	13
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	2 cut(s)	39, 157
CviKI_1	RGCY	2 cut(s)	39, 157
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
FaeI	CATG	1 cut(s)	193
FaiI	YATR	1 cut(s)	191
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	3 cut(s)	21, 75, 84
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	112
MboII	GAAGA	3 cut(s)	21, 38, 104
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	77, 152
MseI	TTAA	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	195
SetI	ASST	4 cut(s)	73, 144, 159, 180
SfaNI	GCATC	1 cut(s)	112
SsiI	CCGC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.